EVORAO

Class: Sequence (Sequence)

A nucleic acid or protein sequence information.

 classDiagram
    class Sequence
    click Sequence href "../Sequence"
      Resource <|-- Sequence
        click Resource href "../Resource"
      
      Sequence : dateIssued
        
      Sequence : dateModified
        
      Sequence : identifier
        
      Sequence : iri
        
      Sequence : keyword
        
      Sequence : publisher
        
          
    
    
    Sequence --> "0..1" PersonOrOrganization : publisher
    click PersonOrOrganization href "../PersonOrOrganization"

        
      Sequence : sequenceFasta
        
      Sequence : sequenceReference
        
          
    
    
    Sequence --> "* _recommended_" SequenceReference : sequenceReference
    click SequenceReference href "../SequenceReference"

Inheritance

Resource
- Sequence

Slots

Name	Cardinality and Range	Description	Inheritance
sequenceReference	* recommended SequenceReference	A reference that permits to retrieve the sequence information from a sequence…	direct
sequenceFasta	0..1 String	Textual encoding of a biological sequence information in FASTA format	direct
keyword	* String	A keyword or tag describing the resource	Resource
dateIssued	0..1 Datetime	Date of formal issuance (e	Resource
dateModified	0..1 Datetime	Most recent date on which the resource was changed, updated or modified	Resource
identifier	* String	A unique identifier of the resource being described or cataloged	Resource
iri	* Uri	International Resource Identifier (IRI) that uniquely identifies or refers to…	Resource
publisher	0..1 PersonOrOrganization	The entity responsible for making the resource available	Resource

Usages

used by	used in	type	used
RecombinantPartIdentification	sequence	range	Sequence
Protein	sequence	range	Sequence
NucleicAcid	sequence	range	Sequence
Pathogen	sequence	range	Sequence
Virus	sequence	range	Sequence
Bacterium	sequence	range	Sequence
Fungus	sequence	range	Sequence
Protozoan	sequence	range	Sequence
Viroid	sequence	range	Sequence
Prion	sequence	range	Sequence

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/evorao/

Mappings

Mapping Type	Mapped Value
self	EVORAO:Sequence
native	EVORAO:Sequence
related	uniprotrdfs:Sequence, uniprotrdfs:Sequence
close	wd:Q3511065, wd:Q3511065

LinkML Source

Direct

Induced

```yaml name: Sequence description: A nucleic acid or protein sequence information. title: Sequence from_schema: https://w3id.org/evorao/ close_mappings: - wd:Q3511065 - wd:Q3511065 related_mappings: - uniprotrdfs:Sequence - uniprotrdfs:Sequence is_a: Resource slot_usage: sequenceReference: name: sequenceReference description: A reference that permits to retrieve the sequence information from a sequence provider. title: sequence reference domain_of: - Sequence - Antibody range: SequenceReference required: false recommended: true multivalued: true sequenceFasta: name: sequenceFasta description: Textual encoding of a biological sequence information in FASTA format. title: sequence FASTA comments: - In cases where no reference sequence exists in public repositories, the corresponding FASTA sequence is expected; otherwise, the reference sequence is sufficient. In case the sequence is made of multiple parts several fasta sequences can be provided. - In FASTA format the line before the nucleotide sequence, called the FASTA definition line, must begin with a charater ('>'), followed by a unique SeqID (sequence identifier). domain_of: - Sequence range: string required: false multivalued: false attributes: sequenceReference: name: sequenceReference description: A reference that permits to retrieve the sequence information from a sequence provider. title: sequence reference from_schema: https://w3id.org/evorao/ rank: 1000 alias: sequenceReference owner: Sequence domain_of: - Sequence - Antibody range: SequenceReference required: false recommended: true multivalued: true sequenceFasta: name: sequenceFasta description: Textual encoding of a biological sequence information in FASTA format. title: sequence FASTA comments: - In cases where no reference sequence exists in public repositories, the corresponding FASTA sequence is expected; otherwise, the reference sequence is sufficient. In case the sequence is made of multiple parts several fasta sequences can be provided. - In FASTA format the line before the nucleotide sequence, called the FASTA definition line, must begin with a charater ('>'), followed by a unique SeqID (sequence identifier). from_schema: https://w3id.org/evorao/ rank: 1000 alias: sequenceFasta owner: Sequence domain_of: - Sequence range: string required: false multivalued: false keyword: name: keyword description: A keyword or tag describing the resource. title: keyword from_schema: https://w3id.org/evorao/ rank: 1000 slot_uri: dcat:keyword alias: keyword owner: Sequence domain_of: - Resource range: string required: false multivalued: true dateIssued: name: dateIssued description: Date of formal issuance (e.g., publication) of the resource. title: date issued comments: - encoded using the relevant ISO 8601 Date and Time compliant string [DATETIME]. from_schema: https://w3id.org/evorao/ exact_mappings: - sepio:0000051 close_mappings: - schema:datePublished - schema:dateCreated rank: 1000 slot_uri: dct:issued alias: dateIssued owner: Sequence domain_of: - Resource range: datetime required: false multivalued: false dateModified: name: dateModified description: Most recent date on which the resource was changed, updated or modified. title: date modified comments: - encoded using the relevant ISO 8601 Date and Time compliant string [DATETIME]. from_schema: https://w3id.org/evorao/ exact_mappings: - sepio:0000036 close_mappings: - schema:dateModified rank: 1000 slot_uri: dct:modified alias: dateModified owner: Sequence domain_of: - Resource range: datetime required: false multivalued: false identifier: name: identifier description: A unique identifier of the resource being described or cataloged. title: identifier comments: - The identifier is a text string which is assigned to the resource to provide an unambiguous reference within a particular context. Persistent identifiers should be provided as HTTP URIs. from_schema: https://w3id.org/evorao/ exact_mappings: - schema:identifier rank: 1000 slot_uri: dct:identifier alias: identifier owner: Sequence domain_of: - Resource range: string required: false multivalued: true iri: name: iri description: International Resource Identifier (IRI) that uniquely identifies or refers to the resource. IRIs include URIs, and URIs include URLs. title: IRI comments: - An IRI is a global identifier standardized by IETF RFC 3987. It may or may not be resolvable on the web. IRIs include URIs, and URIs include URLs. from_schema: https://w3id.org/evorao/ close_mappings: - biolink:iri related_mappings: - mi:url narrow_mappings: - schema:url rank: 1000 is_a: identifier alias: iri owner: Sequence domain_of: - Resource range: uri required: false multivalued: true publisher: name: publisher description: The entity responsible for making the resource available. title: publisher comments: - Resources of type foaf:Agent like EVORAO:PersonOrOrganization are recommended as values for this property. from_schema: https://w3id.org/evorao/ rank: 1000 slot_uri: dct:publisher alias: publisher owner: Sequence domain_of: - Resource range: PersonOrOrganization required: false multivalued: false ```

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