Slot: sequence (sequence)
The related sequence information from a sequence provider or in fasta format.
URI: EVORAO:sequence
Alias: sequence
Applicable Classes
| Name |
Description |
Modifies Slot |
| NucleicAcid |
Nucleic acid related to a pathogen |
yes |
| Protein |
A protein as a derived product from a pathogen |
yes |
| Fungus |
The fungus as a biological material |
no |
| Protozoan |
The protozoan as a biological material |
no |
| Prion |
The prion as a biological material |
no |
| Viroid |
The viroid as a biological material |
no |
| Virus |
The virus as a biological material |
no |
| Bacterium |
The bacterium as a biological material |
no |
| Pathogen |
Biological entity that causes disease in its host, which is typically an infe… |
yes |
| RecombinantPartIdentification |
Identification of a recombinant part |
yes |
Properties
-
Range: Sequence
-
Multivalued: True
-
Required: True
- Sequence information is logically one of the minimal quality requirements for entities such as pathogens, nucleic acids, and proteins, and should always be provided. However, in some rare cases, a nucleic acid may still be valuable even if it has not been sequenced after being extracted from identified material. In such exceptional cases, the sequence may legitimately be missing.
- Sequence information is logically one of the minimal quality requirements for entities such as pathogens, nucleic acids, and proteins, and should always be provided. However, in some rare cases, a nucleic acid may still be valuable even if it has not been sequenced after being extracted from identified material. In such exceptional cases, the sequence may legitimately be missing.
Schema Source
- from schema: https://w3id.org/evorao/
Mappings
| Mapping Type |
Mapped Value |
| self |
EVORAO:sequence |
| native |
EVORAO:sequence |
| related |
uniprotrdfs:sequence, uniprotrdfs:sequence |
| close |
geno:0000239, bao:0002817, geno:0000239, bao:0002817 |
LinkML Source
```yaml
name: sequence
description: The related sequence information from a sequence provider or in fasta
format.
title: sequence
comments:
- Sequence information is logically one of the minimal quality requirements for entities
such as pathogens, nucleic acids, and proteins, and should always be provided. However,
in some rare cases, a nucleic acid may still be valuable even if it has not been
sequenced after being extracted from identified material. In such exceptional cases,
the sequence may legitimately be missing.
- Sequence information is logically one of the minimal quality requirements for entities
such as pathogens, nucleic acids, and proteins, and should always be provided. However,
in some rare cases, a nucleic acid may still be valuable even if it has not been
sequenced after being extracted from identified material. In such exceptional cases,
the sequence may legitimately be missing.
from_schema: https://w3id.org/evorao/
close_mappings:
- geno:0000239
- bao:0002817
- geno:0000239
- bao:0002817
related_mappings:
- uniprotrdfs:sequence
- uniprotrdfs:sequence
rank: 1000
alias: sequence
domain_of:
- RecombinantPartIdentification
- Protein
- NucleicAcid
- Pathogen
range: Sequence
required: true
recommended: true
multivalued: true
```