EVORAO

Class: Virus (Virus)

The virus as a biological material.

URI: EVORAO:Virus

 classDiagram
    class Virus
    click Virus href "../Virus"
      Pathogen <|-- Virus
        click Pathogen href "../Pathogen"
      
      Virus : accessPointUrl
        
      Virus : additionalCategory
        
          
    
    
    Virus --> "* _recommended_" ProductCategory : additionalCategory
    click ProductCategory href "../ProductCategory"

        
      Virus : availability
        
      Virus : biologicalMaterialOrigin
        
          
    
    
    Virus --> "1" BiologicalMaterialOrigin : biologicalMaterialOrigin
    click BiologicalMaterialOrigin href "../BiologicalMaterialOrigin"

        
      Virus : biosafetyLevel
        
          
    
    
    Virus --> "0..1" BiosafetyLevel : biosafetyLevel
    click BiosafetyLevel href "../BiosafetyLevel"

        
      Virus : biosafetyRestrictions
        
      Virus : canBeUsedToProduceGmo
        
      Virus : category
        
          
    
    
    Virus --> "1" ProductCategory : category
    click ProductCategory href "../ProductCategory"

        
      Virus : certification
        
          
    
    
    Virus --> "*" Certification : certification
    click Certification href "../Certification"

        
      Virus : clinicalInformation
        
      Virus : coInfectingViruses
        
          
    
    
    Virus --> "*" VirusName : coInfectingViruses
    click VirusName href "../VirusName"

        
      Virus : collection
        
          
    
    
    Virus --> "1..*" Collection : collection
    click Collection href "../Collection"

        
      Virus : complementaryDocument
        
          
    
    
    Virus --> "*" Document : complementaryDocument
    click Document href "../Document"

        
      Virus : contactPoint
        
          
    
    
    Virus --> "0..1 _recommended_" ContactPoint : contactPoint
    click ContactPoint href "../ContactPoint"

        
      Virus : contaminationWithCoInfectingViruses
        
      Virus : cultivability
        
      Virus : dateIssued
        
      Virus : dateModified
        
      Virus : description
        
      Virus : doi
        
          
    
    
    Virus --> "*" Doi : doi
    click Doi href "../Doi"

        
      Virus : externalRelatedReference
        
          
    
    
    Virus --> "*" ExternalRelatedReference : externalRelatedReference
    click ExternalRelatedReference href "../ExternalRelatedReference"

        
      Virus : fundingSource
        
          
    
    
    Virus --> "*" FundingSource : fundingSource
    click FundingSource href "../FundingSource"

        
      Virus : genomeSequencing
        
      Virus : iataClassification
        
          
    
    
    Virus --> "1" IataClassification : iataClassification
    click IataClassification href "../IataClassification"

        
      Virus : identificationTechnique
        
      Virus : identifier
        
      Virus : infectivity
        
      Virus : infectivityTest
        
      Virus : internalReference
        
      Virus : iri
        
      Virus : isolationConditions
        
      Virus : isolationHost
        
          
    
    
    Virus --> "*" IsolationHost : isolationHost
    click IsolationHost href "../IsolationHost"

        
      Virus : isolationTechnique
        
      Virus : keyword
        
      Virus : keywords
        
          
    
    
    Virus --> "1..*" Keyword : keywords
    click Keyword href "../Keyword"

        
      Virus : letterOfAuthority
        
      Virus : materialSafetyDataSheet
        
          
    
    
    Virus --> "0..1" MaterialSafetyDataSheet : materialSafetyDataSheet
    click MaterialSafetyDataSheet href "../MaterialSafetyDataSheet"

        
      Virus : mycoplasmicContent
        
      Virus : note
        
      Virus : originator
        
          
    
    
    Virus --> "0..1" Originator : originator
    click Originator href "../Originator"

        
      Virus : passage
        
      Virus : pathogenIdentification
        
          
    
    
    Virus --> "1..*" PathogenIdentification : pathogenIdentification
    click PathogenIdentification href "../PathogenIdentification"

        
      Virus : preparationTechnique
        
      Virus : productionCellLine
        
          
    
    
    Virus --> "*" ProductionCellLine : productionCellLine
    click ProductionCellLine href "../ProductionCellLine"

        
      Virus : productPicture
        
          
    
    
    Virus --> "*" Image : productPicture
    click Image href "../Image"

        
      Virus : propagationHost
        
          
    
    
    Virus --> "*" PropagationHost : propagationHost
    click PropagationHost href "../PropagationHost"

        
      Virus : provider
        
          
    
    
    Virus --> "1" Provider : provider
    click Provider href "../Provider"

        
      Virus : publisher
        
          
    
    
    Virus --> "0..1" PersonOrOrganization : publisher
    click PersonOrOrganization href "../PersonOrOrganization"

        
      Virus : qualityGrading
        
      Virus : refSku
        
      Virus : riskGroup
        
          
    
    
    Virus --> "0..1 _recommended_" RiskGroup : riskGroup
    click RiskGroup href "../RiskGroup"

        
      Virus : sequence
        
          
    
    
    Virus --> "1..* _recommended_" Sequence : sequence
    click Sequence href "../Sequence"

        
      Virus : shippingConditions
        
      Virus : storageConditions
        
      Virus : suspectedEpidemiologicalOrigin
        
          
    
    
    Virus --> "*" GeographicalOrigin : suspectedEpidemiologicalOrigin
    click GeographicalOrigin href "../GeographicalOrigin"

        
      Virus : technicalRecommendation
        
      Virus : thirdPartyDistributionConsent
        
      Virus : titer
        
      Virus : title
        
      Virus : transmissionMethod
        
          
    
    
    Virus --> "*" TransmissionMethod : transmissionMethod
    click TransmissionMethod href "../TransmissionMethod"

        
      Virus : unitCost
        
      Virus : unitCostCurrency
        
      Virus : unitCostNote
        
      Virus : unitDefinition
        
      Virus : usageRestrictions
        
      Virus : version

Inheritance

Slots

Name Cardinality and Range Description Inheritance
coInfectingViruses *
VirusName		 Identifies other viruses that may co-infect the host organism along with the … direct
contaminationWithCoInfectingViruses 0..1 recommended
String		 Indicates whether the sample contains contamination with co-infecting viruses direct
mycoplasmicContent 0..1 recommended
String		 Indicates whether the sample contains mycoplasma contamination direct
biologicalMaterialOrigin 1
BiologicalMaterialOrigin		 Information about the origin of the biological material, essential for access… Pathogen
suspectedEpidemiologicalOrigin *
GeographicalOrigin		 The potential geographical or environmental source from which the pathogen is… Pathogen
isolationHost *
IsolationHost		 The host organism from which the pathogen was originally isolated Pathogen
productionCellLine *
ProductionCellLine		 The cell line used for the production or propagation of the pathogen, detaili… Pathogen
propagationHost *
PropagationHost		 The host organism that propagates the pathogen Pathogen
transmissionMethod *
TransmissionMethod		 The method or route through which the pathogen is transmitted from one host t… Pathogen
sequence 1..* recommended
Sequence		 The related sequence information from a sequence provider or in fasta format Pathogen
cultivability 1
String		 The ability of the pathogen to be cultivated or grown in laboratory condition… Pathogen
clinicalInformation 0..1
String		 Details about the clinical aspects of the pathogen, including symptoms, sever… Pathogen
identificationTechnique 0..1
String		 A method or procedure used to detect, identify, and confirm the presence of a… Pathogen
infectivity 1
String		 Indicates the ability of the pathogen to establish an infection in a host org… Pathogen
infectivityTest 0..1
String		 The description of the completed infectivity test, providing details on the m… Pathogen
isolationTechnique 0..1
String		 The specific method or procedure used to isolate the pathogen from a host org… Pathogen
isolationConditions 0..1
String		 The environmental and procedural conditions under which the pathogen was isol… Pathogen
letterOfAuthority 0..1 recommended
String		 Indicate whether a Letter of Authority is required, confirming the necessity … Pathogen
passage 0..1
String		 The number of times the pathogen was cultured through serial passage, a proce… Pathogen
genomeSequencing 1
String		 The extent of the pathogen’s genetic material that has been sequenced, with p… Pathogen
titer 1
String		 The titer value, its corresponding unit, and the method of quantification (e Pathogen
iataClassification 1
IataClassification		 The corresponding International Air Transport Association (IATA)’s category f… Product
shippingConditions 1
String		 Specification of the terms and parameters for transporting Product
materialSafetyDataSheet 0..1
MaterialSafetyDataSheet		 A Material Safety Data Sheet (MSDS) or Safety Data Sheet (SDS) is a standardi… Product
originator 0..1
Originator		 The individual or organization responsible for the original discovery, isolat… Product
storageConditions 1
String		 Specifies the conditions under which the product has to be stored to maintain… Product
thirdPartyDistributionConsent 0..1
Boolean		 Indicates whether the biological material can be distributed without restrict… Product
usageRestrictions 0..1
String		 Specifies any limitations or conditions on the use of the biological material… Product
preparationTechnique 0..1
String		 The technique, method, or procedure employed to obtain or prepare the materia… Product
accessPointUrl 1
Uri		 The URL that permits to access to the product/service detailed description pa… ProductOrService
refSku 1
String		 The reference or the stock keeping unit of the service or item provided in th… ProductOrService
unitDefinition 0..1 recommended
String		 A short description of what is delivered when one unit of this item is ordere… ProductOrService
category 1
ProductCategory		 The main category of the service or product ProductOrService
additionalCategory * recommended
ProductCategory		 Any category apart from its main category in which this product or service ca… ProductOrService
unitCost 0..1 recommended
Decimal		 The cost per access for one unit as defined by the unit definition ProductOrService
unitCostCurrency 0..1 recommended
String		 The currency in which the unit cost is expressed, following ISO 4217 three-le… ProductOrService
unitCostNote 0..1
String		 A free-text note describing special conditions or cases where the cost cannot… ProductOrService
qualityGrading 0..1
String		 Information that permits to assess the quality level of what will be provided ProductOrService
pathogenIdentification 1..*
PathogenIdentification		 The identification of the pathogen or group of pathogens (e ProductOrService
doi *
Doi		 A Digital Object Identifier (DOI) that can be related ProductOrService
riskGroup 0..1 recommended
RiskGroup		 The highest risk group related to this resource ProductOrService
biosafetyLevel 0..1
BiosafetyLevel		 The level of biocontainment required or applied in the facility where the bio… ProductOrService
biosafetyRestrictions 0..1
String		 Information about guidelines and regulations designed to prevent the exposure… ProductOrService
canBeUsedToProduceGmo 0..1 recommended
Boolean		 Indicates if the current service or product can be used to produce GMO ProductOrService
provider 1
Provider		 A provider of this product or service, as a specific organization ProductOrService
collection 1..*
Collection		 The collection(s) to which belongs this item ProductOrService
keywords 1..*
Keyword		 List of terms used to tag and categorize this Item ProductOrService
availability 1
String		 The state or condition in which this item is accessible and ready for use or … ProductOrService
complementaryDocument *
Document		 Any additional documents that provide supplementary information, instructions… ProductOrService
technicalRecommendation 0..1
String		 Expert advice or guidelines provided to ensure the optimal use, performance, … ProductOrService
productPicture *
Image		 A picture that can represent the item ProductOrService
externalRelatedReference *
ExternalRelatedReference		 A reference that permits to retrieve another related item from an external pr… ProductOrService
certification *
Certification		 Any certification related to the current product or service; e ProductOrService
internalReference 0..1
String		 Any reference or indication to be used for local retrieval purpose ProductOrService
note 0..1
String		 An aditional information as a textual comment ProductOrService
contactPoint 0..1 recommended
ContactPoint		 An information that allows someone to establish communication ProductOrService
fundingSource *
FundingSource		 A program, grant, or project providing financial support for the access or us… ProductOrService
title 1
String		 A name given to the resource Dataset
description 1 recommended
String		 A short explanation of the characteristics, features, or nature of the curren… Dataset
version 0..1 recommended
String		 The version indicator (name or identifier) of a resource Dataset
keyword *
String		 A keyword or tag describing the resource Resource
dateIssued 0..1
Datetime		 Date of formal issuance (e Resource
dateModified 0..1
Datetime		 Most recent date on which the resource was changed, updated or modified Resource
identifier *
String		 A unique identifier of the resource being described or cataloged Resource
iri *
Uri		 International Resource Identifier (IRI) that uniquely identifies or refers to… Resource
publisher 0..1
PersonOrOrganization		 The entity responsible for making the resource available Resource

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self EVORAO:Virus
native EVORAO:Virus
related ncbitaxon:10239, snomed:49872002, doid:934, mondo:0005108, ncbitaxon:10239, snomed:49872002, doid:934, mondo:0005108
close wd:Q808, schema:Virus, biolink:virus, xco:0000237, ncit:C14283, wd:Q808, schema:Virus, biolink:virus, xco:0000237, ncit:C14283

LinkML Source

Direct

```yaml name: Virus description: The virus as a biological material. title: Virus from_schema: https://w3id.org/evorao/ close_mappings: - wd:Q808 - schema:Virus - biolink:virus - xco:0000237 - ncit:C14283 - wd:Q808 - schema:Virus - biolink:virus - xco:0000237 - ncit:C14283 related_mappings: - ncbitaxon:10239 - snomed:49872002 - doid:934 - mondo:0005108 - ncbitaxon:10239 - snomed:49872002 - doid:934 - mondo:0005108 is_a: Pathogen slots: - coInfectingViruses - contaminationWithCoInfectingViruses - mycoplasmicContent slot_usage: coInfectingViruses: name: coInfectingViruses description: Identifies other viruses that may co-infect the host organism along with the primary virus, indicating the presence of multiple viral infections within the same host. title: co-infecting viruses close_mappings: - dwc:associatedTaxa related_mappings: - efo:0010716 - mesh:D060085 domain_of: - Virus range: VirusName required: false multivalued: true contaminationWithCoInfectingViruses: name: contaminationWithCoInfectingViruses description: Indicates whether the sample contains contamination with co-infecting viruses. Possible values are ‘Not tested’, ‘Contaminated’, and ‘No contamination detected’. title: contamination with co-infecting viruses comments: - When it can be assessed, it is recommended to indicate whether contamination with co-infecting viruses was detected or if the test was not performed. domain_of: - Virus range: string required: false recommended: true multivalued: false mycoplasmicContent: name: mycoplasmicContent description: Indicates whether the sample contains mycoplasma contamination. The possible values are 'Not tested', 'Mycoplasma free', 'Contains mycoplasmae', 'Contains mycoplasmae - A protocol to remove mycoplasmae is provided' title: mycoplasmic content comments: - When it can be assessed, it is recommended to indicate whether mycoplasma contamination was detected or if the test was not performed. domain_of: - Virus range: string required: false recommended: true multivalued: false ```

Induced

```yaml name: Virus description: The virus as a biological material. title: Virus from_schema: https://w3id.org/evorao/ close_mappings: - wd:Q808 - schema:Virus - biolink:virus - xco:0000237 - ncit:C14283 - wd:Q808 - schema:Virus - biolink:virus - xco:0000237 - ncit:C14283 related_mappings: - ncbitaxon:10239 - snomed:49872002 - doid:934 - mondo:0005108 - ncbitaxon:10239 - snomed:49872002 - doid:934 - mondo:0005108 is_a: Pathogen slot_usage: coInfectingViruses: name: coInfectingViruses description: Identifies other viruses that may co-infect the host organism along with the primary virus, indicating the presence of multiple viral infections within the same host. title: co-infecting viruses close_mappings: - dwc:associatedTaxa related_mappings: - efo:0010716 - mesh:D060085 domain_of: - Virus range: VirusName required: false multivalued: true contaminationWithCoInfectingViruses: name: contaminationWithCoInfectingViruses description: Indicates whether the sample contains contamination with co-infecting viruses. Possible values are ‘Not tested’, ‘Contaminated’, and ‘No contamination detected’. title: contamination with co-infecting viruses comments: - When it can be assessed, it is recommended to indicate whether contamination with co-infecting viruses was detected or if the test was not performed. domain_of: - Virus range: string required: false recommended: true multivalued: false mycoplasmicContent: name: mycoplasmicContent description: Indicates whether the sample contains mycoplasma contamination. The possible values are 'Not tested', 'Mycoplasma free', 'Contains mycoplasmae', 'Contains mycoplasmae - A protocol to remove mycoplasmae is provided' title: mycoplasmic content comments: - When it can be assessed, it is recommended to indicate whether mycoplasma contamination was detected or if the test was not performed. domain_of: - Virus range: string required: false recommended: true multivalued: false attributes: coInfectingViruses: name: coInfectingViruses description: Identifies other viruses that may co-infect the host organism along with the primary virus, indicating the presence of multiple viral infections within the same host. title: co-infecting viruses from_schema: https://w3id.org/evorao/ close_mappings: - dwc:associatedTaxa related_mappings: - efo:0010716 - mesh:D060085 rank: 1000 alias: coInfectingViruses owner: Virus domain_of: - Virus range: VirusName required: false multivalued: true contaminationWithCoInfectingViruses: name: contaminationWithCoInfectingViruses description: Indicates whether the sample contains contamination with co-infecting viruses. Possible values are ‘Not tested’, ‘Contaminated’, and ‘No contamination detected’. title: contamination with co-infecting viruses comments: - When it can be assessed, it is recommended to indicate whether contamination with co-infecting viruses was detected or if the test was not performed. from_schema: https://w3id.org/evorao/ rank: 1000 alias: contaminationWithCoInfectingViruses owner: Virus domain_of: - Virus range: string required: false recommended: true multivalued: false equals_string_in: - Not tested - Contaminated - No contamination detected mycoplasmicContent: name: mycoplasmicContent description: Indicates whether the sample contains mycoplasma contamination. The possible values are 'Not tested', 'Mycoplasma free', 'Contains mycoplasmae', 'Contains mycoplasmae - A protocol to remove mycoplasmae is provided' title: mycoplasmic content comments: - When it can be assessed, it is recommended to indicate whether mycoplasma contamination was detected or if the test was not performed. from_schema: https://w3id.org/evorao/ rank: 1000 alias: mycoplasmicContent owner: Virus domain_of: - Virus range: string required: false recommended: true multivalued: false equals_string_in: - Not tested - Mycoplasma free - Contains mycoplasmae - Contains mycoplasmae - A protocol to remove mycoplasmae is provided biologicalMaterialOrigin: name: biologicalMaterialOrigin description: Information about the origin of the biological material, essential for access, utilization, and benefit-sharing of genetic resources in compliance with the Nagoya Protocol. title: biological material origin from_schema: https://w3id.org/evorao/ related_mappings: - sepio:0000058 rank: 1000 alias: biologicalMaterialOrigin owner: Virus domain_of: - Pathogen - Protein - NucleicAcid range: BiologicalMaterialOrigin required: true multivalued: false suspectedEpidemiologicalOrigin: name: suspectedEpidemiologicalOrigin description: The potential geographical or environmental source from which the pathogen is believed to have originated or been transmitted. title: suspected epidemiological origin from_schema: https://w3id.org/evorao/ related_mappings: - schema:countryOfOrigin - dct:spatial rank: 1000 alias: suspectedEpidemiologicalOrigin owner: Virus domain_of: - Pathogen range: GeographicalOrigin required: false multivalued: true isolationHost: name: isolationHost description: The host organism from which the pathogen was originally isolated. title: isolation host from_schema: https://w3id.org/evorao/ rank: 1000 alias: isolationHost owner: Virus domain_of: - Pathogen range: IsolationHost required: false multivalued: true productionCellLine: name: productionCellLine description: The cell line used for the production or propagation of the pathogen, detailing the cellular environment employed in its cultivation and study. title: production cell line from_schema: https://w3id.org/evorao/ rank: 1000 alias: productionCellLine owner: Virus domain_of: - Pathogen range: ProductionCellLine required: false multivalued: true propagationHost: name: propagationHost description: The host organism that propagates the pathogen. title: propagation host from_schema: https://w3id.org/evorao/ rank: 1000 alias: propagationHost owner: Virus domain_of: - Pathogen range: PropagationHost required: false multivalued: true transmissionMethod: name: transmissionMethod description: The method or route through which the pathogen is transmitted from one host to another, detailing the mechanisms of infection spread. title: transmission method from_schema: https://w3id.org/evorao/ close_mappings: - schema:transmissionMethod rank: 1000 alias: transmissionMethod owner: Virus domain_of: - Pathogen range: TransmissionMethod required: false multivalued: true sequence: name: sequence description: The related sequence information from a sequence provider or in fasta format. title: sequence comments: - Sequence information is logically one of the minimal quality requirements for entities such as pathogens, nucleic acids, and proteins, and should always be provided. However, in some rare cases, a nucleic acid may still be valuable even if it has not been sequenced after being extracted from identified material. In such exceptional cases, the sequence may legitimately be missing. from_schema: https://w3id.org/evorao/ close_mappings: - geno:0000239 - bao:0002817 related_mappings: - uniprotrdfs:sequence rank: 1000 alias: sequence owner: Virus domain_of: - Pathogen - RecombinantPartIdentification - Protein - NucleicAcid range: Sequence required: true recommended: true multivalued: true cultivability: name: cultivability description: The ability of the pathogen to be cultivated or grown in laboratory conditions. Possible values are 'Cultivable pathogen', 'Uncultivable pathogen' or 'Inactivated pathogen'. title: cultivability comments: - Might also be related to a product sub-category that helps filtering. from_schema: https://w3id.org/evorao/ rank: 1000 ifabsent: string(Cultivable) alias: cultivability owner: Virus domain_of: - Pathogen range: string required: true multivalued: false equals_string_in: - Cultivable - Uncultivable - Inactivated clinicalInformation: name: clinicalInformation description: Details about the clinical aspects of the pathogen, including symptoms, severity, treatment protocols, and patient outcomes. title: clinical information from_schema: https://w3id.org/evorao/ related_mappings: - ncit:C25398 rank: 1000 alias: clinicalInformation owner: Virus domain_of: - Pathogen range: string required: false multivalued: false identificationTechnique: name: identificationTechnique description: A method or procedure used to detect, identify, and confirm the presence of a specific nucleic acid sequence, pathogen, or associated constructs. This may involve various techniques such as PCR, sequencing, hybridization, or other molecular methods, utilizing specific tools and procedures for accurate detection and analysis. title: identification technique from_schema: https://w3id.org/evorao/ rank: 1000 alias: identificationTechnique owner: Virus domain_of: - Pathogen - NucleicAcid range: string required: false multivalued: false infectivity: name: infectivity description: Indicates the ability of the pathogen to establish an infection in a host organism, with possible values detailing whether infectivity has been tested, quantified, or cannot be tested due to non-cultivable nature. title: infectivity from_schema: https://w3id.org/evorao/ rank: 1000 alias: infectivity owner: Virus domain_of: - Pathogen range: string required: true multivalued: false equals_string_in: - Infectivity tested - Infectivity tested and quantified - Non cultivable sample, infectivity cannot be tested infectivityTest: name: infectivityTest description: The description of the completed infectivity test, providing details on the methods, conditions, and results of the test used to assess the pathogen's ability to infect a host organism. title: infectivity Test from_schema: https://w3id.org/evorao/ related_mappings: - cido:0001195 rank: 1000 alias: infectivityTest owner: Virus domain_of: - Pathogen range: string required: false multivalued: false isolationTechnique: name: isolationTechnique description: The specific method or procedure used to isolate the pathogen from a host organism or sample, detailing the techniques and tools employed in the isolation process. title: isolation technique from_schema: https://w3id.org/evorao/ rank: 1000 alias: isolationTechnique owner: Virus domain_of: - Pathogen range: string required: false multivalued: false isolationConditions: name: isolationConditions description: The environmental and procedural conditions under which the pathogen was isolated. title: isolation conditions from_schema: https://w3id.org/evorao/ rank: 1000 alias: isolationConditions owner: Virus domain_of: - Pathogen range: string required: false multivalued: false letterOfAuthority: name: letterOfAuthority description: Indicate whether a Letter of Authority is required, confirming the necessity of formal authorization. The possible values are 'Not applicable', 'Not required', 'Required for customers in the EU' or 'Required'. title: letter of authority comments: - When a letter of authority may be required, as is often the case for certain pathogens such as plant viruses, it is strongly recommended to indicate the status of this requirement, as this information may affect delivery conditions and is important for the end-user. from_schema: https://w3id.org/evorao/ rank: 1000 ifabsent: string(Not applicable) alias: letterOfAuthority owner: Virus domain_of: - Pathogen range: string required: false recommended: true multivalued: false equals_string_in: - Not applicable - Not required - Required for customers in the EU - Required passage: name: passage description: The number of times the pathogen was cultured through serial passage, a process used to increase the stock but which can also lead to the evolution of the original pathogen. title: passage from_schema: https://w3id.org/evorao/ related_mappings: - ncit:C164572 rank: 1000 alias: passage owner: Virus domain_of: - Pathogen range: string required: false multivalued: false genomeSequencing: name: genomeSequencing description: The extent of the pathogen's genetic material that has been sequenced, with possible values including 'Complete genome' for the entire genome, 'Complete coding sequence' for all coding regions, and 'Partial sequence' for only a portion of the genetic material. title: genome sequencing from_schema: https://w3id.org/evorao/ close_mappings: - bao:0002788 rank: 1000 alias: genomeSequencing owner: Virus domain_of: - Pathogen range: string required: true multivalued: false equals_string_in: - Complete genome - Complete coding sequence - Partial sequence titer: name: titer description: The titer value, its corresponding unit, and the method of quantification (e.g., RT-qPCR, TCID50), representing the concentration or amount of unit present in the sample. The titer corresponds to the highest dilution factor that still yields a positive reading. title: titer from_schema: https://w3id.org/evorao/ related_mappings: - wd:Q2166189 rank: 1000 alias: titer owner: Virus domain_of: - Pathogen - NucleicAcid range: string required: true multivalued: false iataClassification: name: iataClassification description: The corresponding International Air Transport Association (IATA)'s category for this Product. title: IATA classification from_schema: https://w3id.org/evorao/ close_mappings: - wdp:P238 - schema:iataCode rank: 1000 alias: iataClassification owner: Virus domain_of: - Product range: IataClassification required: true multivalued: false shippingConditions: name: shippingConditions description: Specification of the terms and parameters for transporting. title: shipping conditions from_schema: https://w3id.org/evorao/ close_mappings: - schema:shippingConditions rank: 1000 alias: shippingConditions owner: Virus domain_of: - Product range: string required: true multivalued: false materialSafetyDataSheet: name: materialSafetyDataSheet description: A Material Safety Data Sheet (MSDS) or Safety Data Sheet (SDS) is a standardized document that contains crucial occupational safety and health information related to the product. title: material safety data sheet comments: - The MSD is a document that provides detailed information about the properties, hazards, handling, storage, and emergency procedures related to the use of a chemical or substance. from_schema: https://w3id.org/evorao/ rank: 1000 alias: materialSafetyDataSheet owner: Virus domain_of: - Product range: MaterialSafetyDataSheet required: false multivalued: false originator: name: originator description: The individual or organization responsible for the original discovery, isolation, or creation of an item, providing information about the source or origin of the sample. title: originator from_schema: https://w3id.org/evorao/ close_mappings: - dct:provenance rank: 1000 alias: originator owner: Virus domain_of: - Product range: Originator required: false multivalued: false storageConditions: name: storageConditions description: Specifies the conditions under which the product has to be stored to maintain stability and integrity, such as temperature, buffer, and other environmental factors. title: storage conditions comments: - e.g, could be a xsd:string in enumeration ('Freeze Dried', 'Liquid Nitrogen', 'Viral Storage Medium -20C', 'Viral Storage Medium -80C', 'Living plant material (>= +4°C)', 'Gas Phase', 'Ethanol -20C', 'Ethanol -80C', 'Dried'). from_schema: https://w3id.org/evorao/ rank: 1000 alias: storageConditions owner: Virus domain_of: - Product range: string required: true multivalued: false thirdPartyDistributionConsent: name: thirdPartyDistributionConsent description: Indicates whether the biological material can be distributed without restriction to third parties, as indicated by the ABS permit, in case an ABS permit is required. title: third party distribution consent from_schema: https://w3id.org/evorao/ rank: 1000 alias: thirdPartyDistributionConsent owner: Virus domain_of: - Product range: boolean required: false multivalued: false usageRestrictions: name: usageRestrictions description: Specifies any limitations or conditions on the use of the biological material, including restrictions on research, commercial use, or distribution, considering any potential concerns about the related genetic material. title: usage restrictions from_schema: https://w3id.org/evorao/ rank: 1000 alias: usageRestrictions owner: Virus domain_of: - Product range: string required: false multivalued: false preparationTechnique: name: preparationTechnique description: The technique, method, or procedure employed to obtain or prepare the material prior to its use or storage. title: preparation technique from_schema: https://w3id.org/evorao/ rank: 1000 alias: preparationTechnique owner: Virus domain_of: - Product range: string required: false multivalued: false accessPointUrl: name: accessPointUrl description: The URL that permits to access to the product/service detailed description page on the provider's website and/or allows to place an order about it or at least describe the process to place an order/enquiry. title: access point URL from_schema: https://w3id.org/evorao/ exact_mappings: - schema:serviceURL related_mappings: - dcat:landingPage broad_mappings: - schema:url rank: 1000 is_a: iri alias: accessPointUrl owner: Virus domain_of: - ProductOrService range: uri required: true multivalued: false refSku: name: refSku description: The reference or the stock keeping unit of the service or item provided in the provider's catalogue. title: ref SKU from_schema: https://w3id.org/evorao/ exact_mappings: - schema:sku close_mappings: - dwc:catalogNumber broad_mappings: - dct:identifier - schema:identifier rank: 1000 is_a: identifier alias: refSku owner: Virus domain_of: - ProductOrService range: string required: true multivalued: false unitDefinition: name: unitDefinition description: A short description of what is delivered when one unit of this item is ordered, such as quantity or packaging. title: unit definition comments: - 'The description of what will be delivered to the end-user (e.g.: packaging, quantity...).' from_schema: https://w3id.org/evorao/ related_mappings: - dct:format rank: 1000 alias: unitDefinition owner: Virus domain_of: - ProductOrService range: string required: false recommended: true multivalued: false category: name: category description: The main category of the service or product. title: category from_schema: https://w3id.org/evorao/ close_mappings: - schema:category - gr:category rank: 1000 slot_uri: dcat:theme alias: category owner: Virus domain_of: - ProductOrService range: ProductCategory required: true multivalued: false additionalCategory: name: additionalCategory description: Any category apart from its main category in which this product or service can fit. title: additional category from_schema: https://w3id.org/evorao/ close_mappings: - schema:additionalType rank: 1000 is_a: category alias: additionalCategory owner: Virus domain_of: - ProductOrService range: ProductCategory required: false recommended: true multivalued: true unitCost: name: unitCost description: The cost per access for one unit as defined by the unit definition. title: unit cost comments: - The cost per access may not always be defined as a fixed numerical value. In some cases, the price is conditional or available only upon request. To accommodate such cases, descriptive information should be provided through the property EVORAO:unitCostNote (xsd:string). This allows handling of cost statements such as “on request,” “depends on volume,” or “free access for academics,” which cannot be captured by a simple numeric value. from_schema: https://w3id.org/evorao/ close_mappings: - schema:price rank: 1000 alias: unitCost owner: Virus domain_of: - ProductOrService range: decimal required: false recommended: true multivalued: false unitCostCurrency: name: unitCostCurrency description: The currency in which the unit cost is expressed, following ISO 4217 three-letter codes (e.g., EUR, USD). title: unit cost currency from_schema: https://w3id.org/evorao/ close_mappings: - schema:priceCurrency rank: 1000 ifabsent: string(EUR) alias: unitCostCurrency owner: Virus domain_of: - ProductOrService range: string required: false recommended: true multivalued: false unitCostNote: name: unitCostNote description: A free-text note describing special conditions or cases where the cost cannot be represented by a numerical value (e.g., on request, free for academics, depends on volume). title: unit cost note from_schema: https://w3id.org/evorao/ rank: 1000 alias: unitCostNote owner: Virus domain_of: - ProductOrService range: string required: false multivalued: false qualityGrading: name: qualityGrading description: Information that permits to assess the quality level of what will be provided. title: quality grading from_schema: https://w3id.org/evorao/ close_mappings: - bao:0002662 - sio:000217 rank: 1000 alias: qualityGrading owner: Virus domain_of: - ProductOrService range: string required: false multivalued: false pathogenIdentification: name: pathogenIdentification description: The identification of the pathogen or group of pathogens (e.g; name, taxon identification, etc.) related to the current item. title: pathogen identification comments: - 'The pathogen identification contains information about name and taxon but in some cases(e.g: FAIRSHARING) there may have no direct pathogen related but simply a taxonomic information .... the default value should be the root of virology: Viruses.' from_schema: https://w3id.org/evorao/ rank: 1000 alias: pathogenIdentification owner: Virus domain_of: - ProductOrService range: PathogenIdentification required: true multivalued: true doi: name: doi description: A Digital Object Identifier (DOI) that can be related. title: DOI from_schema: https://w3id.org/evorao/ exact_mappings: - wdp:P356 close_mappings: - wdp:P356 - reproduceme:doi broad_mappings: - dct:bibliographicCitation rank: 1000 alias: doi owner: Virus domain_of: - ProductOrService - Publication range: Doi required: false multivalued: true riskGroup: name: riskGroup description: The highest risk group related to this resource. The risk group of a biological agent guiding its initial handling in labs according to the risk group classification defined by the WHO laboratory biosafety manual. title: risk group comments: - The Risk Group (RG) assignments to an item are jurisdiction-dependent and may differ between countries/regions and by material form (e.g., live isolate, inactivated preparation, nucleic acid). Assignments can also change over time. We store here a single reference assignment; users must verify the current, locally applicable assignment with their competent authority. from_schema: https://w3id.org/evorao/ exact_mappings: - wdp:P12663 related_mappings: - bao:0002826 rank: 1000 alias: riskGroup owner: Virus domain_of: - ProductOrService range: RiskGroup required: false recommended: true multivalued: false biosafetyLevel: name: biosafetyLevel description: The level of biocontainment required or applied in the facility where the biological agent is manipulated. title: biosafety level comments: - The Biosafety Level (BSL) reflects the operational safety measures implemented, which may differ from the intrinsic risk defined by the agent’s Risk Group (RG). from_schema: https://w3id.org/evorao/ exact_mappings: - wdp:P1604 - bao:0002826 rank: 1000 alias: biosafetyLevel owner: Virus domain_of: - ProductOrService range: BiosafetyLevel required: false multivalued: false biosafetyRestrictions: name: biosafetyRestrictions description: Information about guidelines and regulations designed to prevent the exposure to or release of potentially harmful biological agents. It thereby contributes to protecting people and the environment from biohazards while accessing this product or service. title: biosafety restrictions from_schema: https://w3id.org/evorao/ related_mappings: - bao:0002826 - wdp:P12663 - wdp:P1604 rank: 1000 alias: biosafetyRestrictions owner: Virus domain_of: - ProductOrService range: string required: false multivalued: false canBeUsedToProduceGmo: name: canBeUsedToProduceGmo description: Indicates if the current service or product can be used to produce GMO. title: can be used to produce GMO comments: - Set to TRUE if it can produce GMO. - It is recommended to have a value for this field, no value will be understood as unknown. from_schema: https://w3id.org/evorao/ broad_mappings: - schema:potentialUse rank: 1000 alias: canBeUsedToProduceGmo owner: Virus domain_of: - ProductOrService range: boolean required: false recommended: true multivalued: false provider: name: provider description: A provider of this product or service, as a specific organization. title: provider from_schema: https://w3id.org/evorao/ exact_mappings: - sio:000066 close_mappings: - schema:provider - dct:publisher rank: 1000 alias: provider owner: Virus domain_of: - ProductOrService range: Provider required: true multivalued: false collection: name: collection description: The collection(s) to which belongs this item. title: collection from_schema: https://w3id.org/evorao/ related_mappings: - afop:AFX_0002720 broad_mappings: - dct:isPartOf rank: 1000 alias: collection owner: Virus domain_of: - ProductOrService range: Collection required: true multivalued: true keywords: name: keywords description: List of terms used to tag and categorize this Item. title: keywords from_schema: https://w3id.org/evorao/ exact_mappings: - schema:keywords close_mappings: - dcat:keyword rank: 1000 alias: keywords owner: Virus domain_of: - ProductOrService range: Keyword required: true multivalued: true availability: name: availability description: The state or condition in which this item is accessible and ready for use or can be obtained. title: availability comments: - Possible availabilities may differ from a project to another. from_schema: https://w3id.org/evorao/ close_mappings: - schema:availability - dct:available rank: 1000 ifabsent: string(on request) alias: availability owner: Virus domain_of: - ProductOrService range: string required: true multivalued: false complementaryDocument: name: complementaryDocument description: Any additional documents that provide supplementary information, instructions, or guidelines relevant to the use of this item. title: complementary document from_schema: https://w3id.org/evorao/ close_mappings: - sepio:0000442 rank: 1000 alias: complementaryDocument owner: Virus domain_of: - ProductOrService range: Document required: false multivalued: true technicalRecommendation: name: technicalRecommendation description: Expert advice or guidelines provided to ensure the optimal use, performance, and maintenance of what is provided, including best practices, troubleshooting tips, and procedural instructions. title: technical recommendation from_schema: https://w3id.org/evorao/ rank: 1000 alias: technicalRecommendation owner: Virus domain_of: - ProductOrService range: string required: false multivalued: false productPicture: name: productPicture description: A picture that can represent the item. title: product picture from_schema: https://w3id.org/evorao/ rank: 1000 alias: productPicture owner: Virus domain_of: - ProductOrService range: Image required: false multivalued: true externalRelatedReference: name: externalRelatedReference description: A reference that permits to retrieve another related item from an external provider. title: external related reference from_schema: https://w3id.org/evorao/ broad_mappings: - dct:references rank: 1000 alias: externalRelatedReference owner: Virus domain_of: - ProductOrService range: ExternalRelatedReference required: false multivalued: true certification: name: certification description: Any certification related to the current product or service; e.g., ISO certification. title: certification from_schema: https://w3id.org/evorao/ exact_mappings: - schema:hasCertification close_mappings: - dct:conformsTo rank: 1000 alias: certification owner: Virus domain_of: - ProductOrService range: Certification required: false multivalued: true internalReference: name: internalReference description: Any reference or indication to be used for local retrieval purpose. title: internal reference from_schema: https://w3id.org/evorao/ broad_mappings: - dct:references rank: 1000 alias: internalReference owner: Virus domain_of: - ProductOrService range: string required: false multivalued: false note: name: note description: An aditional information as a textual comment. title: note from_schema: https://w3id.org/evorao/ rank: 1000 slot_uri: skos:note alias: note owner: Virus domain_of: - ProductOrService range: string required: false multivalued: false contactPoint: name: contactPoint description: An information that allows someone to establish communication. title: contact point from_schema: https://w3id.org/evorao/ exact_mappings: - schema:contactPoint rank: 1000 slot_uri: dcat:contactPoint alias: contactPoint owner: Virus domain_of: - ProductOrService - PersonOrOrganization range: ContactPoint required: false recommended: true multivalued: false fundingSource: name: fundingSource description: A program, grant, or project providing financial support for the access or use of the product or service, either fully or partially. title: funding source comments: - Links a product or service to one or more financial mechanisms, initiatives, or grants that enable or support its provision or access. from_schema: https://w3id.org/evorao/ exact_mappings: - schema:funding rank: 1000 alias: fundingSource owner: Virus domain_of: - ProductOrService range: FundingSource required: false multivalued: true title: name: title description: A name given to the resource. title: title comments: - The title of the item should be as short and descriptive as possible. - 'E.g. for virus products it should basically be based on the following Pattern: ''Virus name'', ''virus host type'', ''collection year'', ''country of collection'' ex ''suspected epidemiological origin'', ''genotype'', ''strain'', ''variant name or specific feature.' from_schema: https://w3id.org/evorao/ exact_mappings: - schema:name - rdfs:label rank: 1000 slot_uri: dct:title alias: title owner: Virus domain_of: - Dataset - DataService - Publication - Term - License - Certification - FundingSource range: string required: true multivalued: false description: name: description description: A short explanation of the characteristics, features, or nature of the current item. title: description comments: - Describe this item in few lines. This description will serve as a summary to present the resource. from_schema: https://w3id.org/evorao/ exact_mappings: - schema:description rank: 1000 slot_uri: dct:description alias: description owner: Virus domain_of: - Dataset - DataService - Term - PersonOrOrganization - File - ContactPoint - License - Certification - FundingSource range: string required: true recommended: true multivalued: false version: name: version description: The version indicator (name or identifier) of a resource. title: version from_schema: https://w3id.org/evorao/ exact_mappings: - pav:version close_mappings: - wdp:P393 - schema:version related_mappings: - schema:identifier rank: 1000 slot_uri: dcat:version alias: version owner: Virus domain_of: - Dataset - Version - Taxonomy range: string required: false recommended: true multivalued: false keyword: name: keyword description: A keyword or tag describing the resource. title: keyword from_schema: https://w3id.org/evorao/ rank: 1000 slot_uri: dcat:keyword alias: keyword owner: Virus domain_of: - Resource range: string required: false multivalued: true dateIssued: name: dateIssued description: Date of formal issuance (e.g., publication) of the resource. title: date issued comments: - encoded using the relevant ISO 8601 Date and Time compliant string [DATETIME]. from_schema: https://w3id.org/evorao/ exact_mappings: - sepio:0000051 close_mappings: - schema:datePublished - schema:dateCreated rank: 1000 slot_uri: dct:issued alias: dateIssued owner: Virus domain_of: - Resource range: datetime required: false multivalued: false dateModified: name: dateModified description: Most recent date on which the resource was changed, updated or modified. title: date modified comments: - encoded using the relevant ISO 8601 Date and Time compliant string [DATETIME]. from_schema: https://w3id.org/evorao/ exact_mappings: - sepio:0000036 close_mappings: - schema:dateModified rank: 1000 slot_uri: dct:modified alias: dateModified owner: Virus domain_of: - Resource range: datetime required: false multivalued: false identifier: name: identifier description: A unique identifier of the resource being described or cataloged. title: identifier comments: - The identifier is a text string which is assigned to the resource to provide an unambiguous reference within a particular context. Persistent identifiers should be provided as HTTP URIs. from_schema: https://w3id.org/evorao/ exact_mappings: - schema:identifier rank: 1000 slot_uri: dct:identifier alias: identifier owner: Virus domain_of: - Resource range: string required: false multivalued: true iri: name: iri description: International Resource Identifier (IRI) that uniquely identifies or refers to the resource. IRIs include URIs, and URIs include URLs. title: IRI comments: - An IRI is a global identifier standardized by IETF RFC 3987. It may or may not be resolvable on the web. IRIs include URIs, and URIs include URLs. from_schema: https://w3id.org/evorao/ close_mappings: - biolink:iri related_mappings: - mi:url narrow_mappings: - schema:url rank: 1000 is_a: identifier alias: iri owner: Virus domain_of: - Resource range: uri required: false multivalued: true publisher: name: publisher description: The entity responsible for making the resource available. title: publisher comments: - Resources of type foaf:Agent like EVORAO:PersonOrOrganization are recommended as values for this property. from_schema: https://w3id.org/evorao/ rank: 1000 slot_uri: dct:publisher alias: publisher owner: Virus domain_of: - Resource range: PersonOrOrganization required: false multivalued: false ```
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