EVORAO

Class: Protein (Protein)

A protein as a derived product from a pathogen.

 classDiagram
    class Protein
    click Protein href "../Protein"
      Product <|-- Protein
        click Product href "../Product"
      
      Protein : accessPointUrl
        
      Protein : additionalCategory
        
          
    
    
    Protein --> "* _recommended_" ProductCategory : additionalCategory
    click ProductCategory href "../ProductCategory"

        
      Protein : availability
        
      Protein : biologicalMaterialOrigin
        
          
    
    
    Protein --> "1" BiologicalMaterialOrigin : biologicalMaterialOrigin
    click BiologicalMaterialOrigin href "../BiologicalMaterialOrigin"

        
      Protein : biosafetyLevel
        
          
    
    
    Protein --> "0..1" BiosafetyLevel : biosafetyLevel
    click BiosafetyLevel href "../BiosafetyLevel"

        
      Protein : biosafetyRestrictions
        
      Protein : canBeUsedToProduceGmo
        
      Protein : category
        
          
    
    
    Protein --> "1" ProductCategory : category
    click ProductCategory href "../ProductCategory"

        
      Protein : certification
        
          
    
    
    Protein --> "*" Certification : certification
    click Certification href "../Certification"

        
      Protein : collection
        
          
    
    
    Protein --> "1..*" Collection : collection
    click Collection href "../Collection"

        
      Protein : complementaryDocument
        
          
    
    
    Protein --> "*" Document : complementaryDocument
    click Document href "../Document"

        
      Protein : contactPoint
        
          
    
    
    Protein --> "0..1 _recommended_" ContactPoint : contactPoint
    click ContactPoint href "../ContactPoint"

        
      Protein : dateIssued
        
      Protein : dateModified
        
      Protein : description
        
      Protein : doi
        
          
    
    
    Protein --> "*" Doi : doi
    click Doi href "../Doi"

        
      Protein : domain
        
      Protein : expressedAs
        
      Protein : expressionSystem
        
      Protein : externalRelatedReference
        
          
    
    
    Protein --> "*" ExternalRelatedReference : externalRelatedReference
    click ExternalRelatedReference href "../ExternalRelatedReference"

        
      Protein : functionalAndTechnicalDescription
        
      Protein : functionalCharacterization
        
      Protein : fundingSource
        
          
    
    
    Protein --> "*" FundingSource : fundingSource
    click FundingSource href "../FundingSource"

        
      Protein : iataClassification
        
          
    
    
    Protein --> "1" IataClassification : iataClassification
    click IataClassification href "../IataClassification"

        
      Protein : identifier
        
      Protein : inclusionBodiesType
        
      Protein : internalReference
        
      Protein : iri
        
      Protein : keyword
        
      Protein : keywords
        
          
    
    
    Protein --> "1..*" Keyword : keywords
    click Keyword href "../Keyword"

        
      Protein : materialSafetyDataSheet
        
          
    
    
    Protein --> "0..1" MaterialSafetyDataSheet : materialSafetyDataSheet
    click MaterialSafetyDataSheet href "../MaterialSafetyDataSheet"

        
      Protein : note
        
      Protein : originator
        
          
    
    
    Protein --> "0..1" Originator : originator
    click Originator href "../Originator"

        
      Protein : pathogenIdentification
        
          
    
    
    Protein --> "1..*" PathogenIdentification : pathogenIdentification
    click PathogenIdentification href "../PathogenIdentification"

        
      Protein : preparationTechnique
        
      Protein : productPicture
        
          
    
    
    Protein --> "*" Image : productPicture
    click Image href "../Image"

        
      Protein : proteinPurification
        
      Protein : provider
        
          
    
    
    Protein --> "1" Provider : provider
    click Provider href "../Provider"

        
      Protein : publisher
        
          
    
    
    Protein --> "0..1" PersonOrOrganization : publisher
    click PersonOrOrganization href "../PersonOrOrganization"

        
      Protein : qualityGrading
        
      Protein : refSku
        
      Protein : relatedPdb
        
          
    
    
    Protein --> "*" PdbReference : relatedPdb
    click PdbReference href "../PdbReference"

        
      Protein : riskGroup
        
          
    
    
    Protein --> "0..1 _recommended_" RiskGroup : riskGroup
    click RiskGroup href "../RiskGroup"

        
      Protein : sequence
        
          
    
    
    Protein --> "1..* _recommended_" Sequence : sequence
    click Sequence href "../Sequence"

        
      Protein : shippingConditions
        
      Protein : specialFeature
        
          
    
    
    Protein --> "*" SpecialFeature : specialFeature
    click SpecialFeature href "../SpecialFeature"

        
      Protein : storageConditions
        
      Protein : tagSequence
        
          
    
    
    Protein --> "0..1 _recommended_" TagSequence : tagSequence
    click TagSequence href "../TagSequence"

        
      Protein : tagStatusOfTheSolubilizedProtein
        
      Protein : technicalRecommendation
        
      Protein : thirdPartyDistributionConsent
        
      Protein : title
        
      Protein : typeOfFunctionalCharacterization
        
      Protein : unitCost
        
      Protein : unitCostCurrency
        
      Protein : unitCostNote
        
      Protein : unitDefinition
        
      Protein : usageRestrictions
        
      Protein : version

Inheritance

Resource
- Dataset
  - ProductOrService
    - Product
      - Protein

Slots

Name	Cardinality and Range	Description	Inheritance
biologicalMaterialOrigin	1 BiologicalMaterialOrigin	Information about the origin of the biological material, essential for access…	direct
sequence	1..* recommended Sequence	The related sequence information from a sequence provider or in fasta format	direct
relatedPdb	* PdbReference	Identifier for 3D structural data as per the PDB (Protein Data Bank) database	direct
specialFeature	* SpecialFeature	Distinctive attributes of a product that set it apart from other similar item…	direct
tagSequence	0..1 recommended TagSequence	The name of the DNA coding sequence or corresponding peptide/protein sequence…	direct
domain	0..1 String	A distinct structural and functional unit within the protein, often capable o…	direct
expressedAs	0..1 String	Refers to the form in which the protein is produced and manifested in a biolo…	direct
inclusionBodiesType	0..1 String	Refers to the state of aggregated proteins within a cell	direct
expressionSystem	0..1 recommended String	The host organism or cellular environment used to produce a protein from a sp…	direct
functionalCharacterization	0..1 recommended String	The process of determining and describing the specific biological activities …	direct
functionalAndTechnicalDescription	0..1 String	Detailed information about the specific biological functions, mechanisms of a…	direct
proteinPurification	0..1 recommended String	Refers to the degree of purity achieved for a protein sample	direct
tagStatusOfTheSolubilizedProtein	0..1 String	Indicates the presence and condition of a tag on the protein after solubiliza…	direct
typeOfFunctionalCharacterization	* recommended String	Refers to the classification of a protein based on the specific type of funct…	direct
iataClassification	1 IataClassification	The corresponding International Air Transport Association (IATA)’s category f…	Product
shippingConditions	1 String	Specification of the terms and parameters for transporting	Product
materialSafetyDataSheet	0..1 MaterialSafetyDataSheet	A Material Safety Data Sheet (MSDS) or Safety Data Sheet (SDS) is a standardi…	Product
originator	0..1 Originator	The individual or organization responsible for the original discovery, isolat…	Product
storageConditions	1 String	Specifies the conditions under which the product has to be stored to maintain…	Product
thirdPartyDistributionConsent	0..1 Boolean	Indicates whether the biological material can be distributed without restrict…	Product
usageRestrictions	0..1 String	Specifies any limitations or conditions on the use of the biological material…	Product
preparationTechnique	0..1 String	The technique, method, or procedure employed to obtain or prepare the materia…	Product
accessPointUrl	1 Uri	The URL that permits to access to the product/service detailed description pa…	ProductOrService
refSku	1 String	The reference or the stock keeping unit of the service or item provided in th…	ProductOrService
unitDefinition	0..1 recommended String	A short description of what is delivered when one unit of this item is ordere…	ProductOrService
category	1 ProductCategory	The main category of the service or product	ProductOrService
additionalCategory	* recommended ProductCategory	Any category apart from its main category in which this product or service ca…	ProductOrService
unitCost	0..1 recommended Decimal	The cost per access for one unit as defined by the unit definition	ProductOrService
unitCostCurrency	0..1 recommended String	The currency in which the unit cost is expressed, following ISO 4217 three-le…	ProductOrService
unitCostNote	0..1 String	A free-text note describing special conditions or cases where the cost cannot…	ProductOrService
qualityGrading	0..1 String	Information that permits to assess the quality level of what will be provided	ProductOrService
pathogenIdentification	1..* PathogenIdentification	The identification of the pathogen or group of pathogens (e	ProductOrService
doi	* Doi	A Digital Object Identifier (DOI) that can be related	ProductOrService
riskGroup	0..1 recommended RiskGroup	The highest risk group related to this resource	ProductOrService
biosafetyLevel	0..1 BiosafetyLevel	The level of biocontainment required or applied in the facility where the bio…	ProductOrService
biosafetyRestrictions	0..1 String	Information about guidelines and regulations designed to prevent the exposure…	ProductOrService
canBeUsedToProduceGmo	0..1 recommended Boolean	Indicates if the current service or product can be used to produce GMO	ProductOrService
provider	1 Provider	A provider of this product or service, as a specific organization	ProductOrService
collection	1..* Collection	The collection(s) to which belongs this item	ProductOrService
keywords	1..* Keyword	List of terms used to tag and categorize this Item	ProductOrService
availability	1 String	The state or condition in which this item is accessible and ready for use or …	ProductOrService
complementaryDocument	* Document	Any additional documents that provide supplementary information, instructions…	ProductOrService
technicalRecommendation	0..1 String	Expert advice or guidelines provided to ensure the optimal use, performance, …	ProductOrService
productPicture	* Image	A picture that can represent the item	ProductOrService
externalRelatedReference	* ExternalRelatedReference	A reference that permits to retrieve another related item from an external pr…	ProductOrService
certification	* Certification	Any certification related to the current product or service; e	ProductOrService
internalReference	0..1 String	Any reference or indication to be used for local retrieval purpose	ProductOrService
note	0..1 String	An aditional information as a textual comment	ProductOrService
contactPoint	0..1 recommended ContactPoint	An information that allows someone to establish communication	ProductOrService
fundingSource	* FundingSource	A program, grant, or project providing financial support for the access or us…	ProductOrService
title	1 String	A name given to the resource	Dataset
description	1 recommended String	A short explanation of the characteristics, features, or nature of the curren…	Dataset
version	0..1 recommended String	The version indicator (name or identifier) of a resource	Dataset
keyword	* String	A keyword or tag describing the resource	Resource
dateIssued	0..1 Datetime	Date of formal issuance (e	Resource
dateModified	0..1 Datetime	Most recent date on which the resource was changed, updated or modified	Resource
identifier	* String	A unique identifier of the resource being described or cataloged	Resource
iri	* Uri	International Resource Identifier (IRI) that uniquely identifies or refers to…	Resource
publisher	0..1 PersonOrOrganization	The entity responsible for making the resource available	Resource

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/evorao/

Mappings

Mapping Type	Mapped Value
self	EVORAO:Protein
native	EVORAO:Protein
close	wd:Q8054, snomed:88878007, sio:010043, schema:Protein, wd:Q8054, snomed:88878007, sio:010043, schema:Protein

LinkML Source

Direct

Induced

```yaml name: Protein description: A protein as a derived product from a pathogen. title: Protein from_schema: https://w3id.org/evorao/ close_mappings: - wd:Q8054 - snomed:88878007 - sio:010043 - schema:Protein - wd:Q8054 - snomed:88878007 - sio:010043 - schema:Protein is_a: Product slot_usage: biologicalMaterialOrigin: name: biologicalMaterialOrigin description: Information about the origin of the biological material, essential for access, utilization, and benefit-sharing of genetic resources in compliance with the Nagoya Protocol. title: biological material origin related_mappings: - sepio:0000058 domain_of: - Protein - NucleicAcid - Pathogen range: BiologicalMaterialOrigin required: true multivalued: false sequence: name: sequence description: The related sequence information from a sequence provider or in fasta format. title: sequence comments: - Sequence information is logically one of the minimal quality requirements for entities such as pathogens, nucleic acids, and proteins, and should always be provided. However, in some rare cases, a nucleic acid may still be valuable even if it has not been sequenced after being extracted from identified material. In such exceptional cases, the sequence may legitimately be missing. close_mappings: - geno:0000239 - bao:0002817 related_mappings: - uniprotrdfs:sequence domain_of: - Protein - RecombinantPartIdentification - NucleicAcid - Pathogen range: Sequence required: true multivalued: true relatedPdb: name: relatedPdb description: Identifier for 3D structural data as per the PDB (Protein Data Bank) database. title: related PDB close_mappings: - wdp:P638 domain_of: - Protein range: PdbReference required: false multivalued: true specialFeature: name: specialFeature description: Distinctive attributes of a product that set it apart from other similar items e.g., Reference strain, Vaccinal strain, Antiviral resistant strain ... title: special feature domain_of: - Protein range: SpecialFeature required: false multivalued: true tagSequence: name: tagSequence description: The name of the DNA coding sequence or corresponding peptide/protein sequence fused to a sequence of interest, used to facilitate experimental operations such as purification, detection, localization, tracking, solubility enhancement, or selection. Applicable to both proteins and nucleic acids. title: tag sequence comments: - The tagSequence is strongly recommended for cloned nucleic acids and proteins but may be absent in certain cases, such as for some non-cloned nucleic acids. exact_mappings: - bao:0002796 domain_of: - Protein - NucleicAcid range: TagSequence required: false recommended: true multivalued: false domain: name: domain description: A distinct structural and functional unit within the protein, often capable of independent folding and stability, which contributes to the protein's overall function. title: domain close_mappings: - uniprotrdfs:domain domain_of: - Protein range: string required: false multivalued: false expressedAs: name: expressedAs description: Refers to the form in which the protein is produced and manifested in a biological system. Possible values include 'Soluble' (proteins that are dissolved in the cellular or extracellular fluid) and 'Inclusion bodies' (aggregated proteins that are insoluble and form within the cell). title: expressed as close_mappings: - apollo:00000102 domain_of: - Protein range: string required: false multivalued: false inclusionBodiesType: name: inclusionBodiesType description: Refers to the state of aggregated proteins within a cell. Possible values include 'Denatured' (proteins are in an unfolded, inactive state) and 'Refolded' (proteins have been processed to regain their functional, active conformation). title: inclusion bodies type domain_of: - Protein range: string required: false multivalued: false expressionSystem: name: expressionSystem description: The host organism or cellular environment used to produce a protein from a specific gene. Possible values include 'E. coli' (bacterial system), 'Insect cells' (using baculovirus vectors), and 'Mammalian cells' (mammalian cell lines). title: expression system close_mappings: - ro:0002206 domain_of: - Protein range: string required: false recommended: true multivalued: false functionalCharacterization: name: functionalCharacterization description: The process of determining and describing the specific biological activities and roles of a protein. Possible values include 'Functionally characterized' (the protein's functions have been identified and described) and 'No functional characterization' (the protein's functions have not been identified or described). title: functional characterization domain_of: - Protein range: string required: false recommended: true multivalued: false functionalAndTechnicalDescription: name: functionalAndTechnicalDescription description: Detailed information about the specific biological functions, mechanisms of action, and technical attributes of a protein. This includes how the protein interacts within biological systems, its role in cellular processes, and any relevant technical details such as structure, activity, and interactions with other molecules. title: functional and technical description domain_of: - Protein range: string required: false multivalued: false proteinPurification: name: proteinPurification description: Refers to the degree of purity achieved for a protein sample. Possible values include '>95%' (the protein is highly purified, with more than 95% purity) and 'Unpurified expression host lysate or partly purified protein' (the protein is either unpurified and present in the host cell lysate or only partially purified). title: protein purification domain_of: - Protein range: string required: false recommended: true multivalued: false tagStatusOfTheSolubilizedProtein: name: tagStatusOfTheSolubilizedProtein description: Indicates the presence and condition of a tag on the protein after solubilization. Possible values include 'Uncleaved Tag' (the tag is still attached to the protein), 'Cleaved Tag' (the tag has been removed from the protein), and 'No Tag' (the protein does not have a tag). title: tag status of the solubilized protein domain_of: - Protein range: string required: false multivalued: false typeOfFunctionalCharacterization: name: typeOfFunctionalCharacterization description: Refers to the classification of a protein based on the specific type of functional analysis performed to determine its biological activities and roles. Possible values include 'Enzymatic' (the protein has been characterized for its enzyme activity) and 'Antigenic' (the protein has been characterized for its ability to elicit an immune response). title: type of functional Characterization domain_of: - Protein range: string required: false recommended: true multivalued: true attributes: biologicalMaterialOrigin: name: biologicalMaterialOrigin description: Information about the origin of the biological material, essential for access, utilization, and benefit-sharing of genetic resources in compliance with the Nagoya Protocol. title: biological material origin from_schema: https://w3id.org/evorao/ related_mappings: - sepio:0000058 rank: 1000 alias: biologicalMaterialOrigin owner: Protein domain_of: - Protein - NucleicAcid - Pathogen range: BiologicalMaterialOrigin required: true multivalued: false sequence: name: sequence description: The related sequence information from a sequence provider or in fasta format. title: sequence comments: - Sequence information is logically one of the minimal quality requirements for entities such as pathogens, nucleic acids, and proteins, and should always be provided. However, in some rare cases, a nucleic acid may still be valuable even if it has not been sequenced after being extracted from identified material. In such exceptional cases, the sequence may legitimately be missing. from_schema: https://w3id.org/evorao/ close_mappings: - geno:0000239 - bao:0002817 related_mappings: - uniprotrdfs:sequence rank: 1000 alias: sequence owner: Protein domain_of: - Protein - RecombinantPartIdentification - NucleicAcid - Pathogen range: Sequence required: true recommended: true multivalued: true relatedPdb: name: relatedPdb description: Identifier for 3D structural data as per the PDB (Protein Data Bank) database. title: related PDB from_schema: https://w3id.org/evorao/ close_mappings: - wdp:P638 rank: 1000 alias: relatedPdb owner: Protein domain_of: - Protein range: PdbReference required: false multivalued: true specialFeature: name: specialFeature description: Distinctive attributes of a product that set it apart from other similar items e.g., Reference strain, Vaccinal strain, Antiviral resistant strain ... title: special feature from_schema: https://w3id.org/evorao/ rank: 1000 alias: specialFeature owner: Protein domain_of: - Protein range: SpecialFeature required: false multivalued: true tagSequence: name: tagSequence description: The name of the DNA coding sequence or corresponding peptide/protein sequence fused to a sequence of interest, used to facilitate experimental operations such as purification, detection, localization, tracking, solubility enhancement, or selection. Applicable to both proteins and nucleic acids. title: tag sequence comments: - The tagSequence is strongly recommended for cloned nucleic acids and proteins but may be absent in certain cases, such as for some non-cloned nucleic acids. from_schema: https://w3id.org/evorao/ exact_mappings: - bao:0002796 rank: 1000 alias: tagSequence owner: Protein domain_of: - Protein - NucleicAcid range: TagSequence required: false recommended: true multivalued: false domain: name: domain description: A distinct structural and functional unit within the protein, often capable of independent folding and stability, which contributes to the protein's overall function. title: domain from_schema: https://w3id.org/evorao/ close_mappings: - uniprotrdfs:domain rank: 1000 alias: domain owner: Protein domain_of: - Protein range: string required: false multivalued: false expressedAs: name: expressedAs description: Refers to the form in which the protein is produced and manifested in a biological system. Possible values include 'Soluble' (proteins that are dissolved in the cellular or extracellular fluid) and 'Inclusion bodies' (aggregated proteins that are insoluble and form within the cell). title: expressed as from_schema: https://w3id.org/evorao/ close_mappings: - apollo:00000102 rank: 1000 alias: expressedAs owner: Protein domain_of: - Protein range: string required: false multivalued: false equals_string_in: - Soluble - Inclusion bodies inclusionBodiesType: name: inclusionBodiesType description: Refers to the state of aggregated proteins within a cell. Possible values include 'Denatured' (proteins are in an unfolded, inactive state) and 'Refolded' (proteins have been processed to regain their functional, active conformation). title: inclusion bodies type from_schema: https://w3id.org/evorao/ rank: 1000 alias: inclusionBodiesType owner: Protein domain_of: - Protein range: string required: false multivalued: false equals_string_in: - Denatured - Refolded expressionSystem: name: expressionSystem description: The host organism or cellular environment used to produce a protein from a specific gene. Possible values include 'E. coli' (bacterial system), 'Insect cells' (using baculovirus vectors), and 'Mammalian cells' (mammalian cell lines). title: expression system from_schema: https://w3id.org/evorao/ close_mappings: - ro:0002206 rank: 1000 alias: expressionSystem owner: Protein domain_of: - Protein range: string required: false recommended: true multivalued: false equals_string_in: - E. coli - Insect cells - Mammalian cells functionalCharacterization: name: functionalCharacterization description: The process of determining and describing the specific biological activities and roles of a protein. Possible values include 'Functionally characterized' (the protein's functions have been identified and described) and 'No functional characterization' (the protein's functions have not been identified or described). title: functional characterization from_schema: https://w3id.org/evorao/ rank: 1000 alias: functionalCharacterization owner: Protein domain_of: - Protein range: string required: false recommended: true multivalued: false equals_string_in: - Functionally characterized - No functional characterization functionalAndTechnicalDescription: name: functionalAndTechnicalDescription description: Detailed information about the specific biological functions, mechanisms of action, and technical attributes of a protein. This includes how the protein interacts within biological systems, its role in cellular processes, and any relevant technical details such as structure, activity, and interactions with other molecules. title: functional and technical description from_schema: https://w3id.org/evorao/ rank: 1000 alias: functionalAndTechnicalDescription owner: Protein domain_of: - Protein range: string required: false multivalued: false proteinPurification: name: proteinPurification description: Refers to the degree of purity achieved for a protein sample. Possible values include '>95%' (the protein is highly purified, with more than 95% purity) and 'Unpurified expression host lysate or partly purified protein' (the protein is either unpurified and present in the host cell lysate or only partially purified). title: protein purification from_schema: https://w3id.org/evorao/ rank: 1000 alias: proteinPurification owner: Protein domain_of: - Protein range: string required: false recommended: true multivalued: false equals_string_in: - Greater than 95 percent - Unpurified expression host lysate or partly purified protein tagStatusOfTheSolubilizedProtein: name: tagStatusOfTheSolubilizedProtein description: Indicates the presence and condition of a tag on the protein after solubilization. Possible values include 'Uncleaved Tag' (the tag is still attached to the protein), 'Cleaved Tag' (the tag has been removed from the protein), and 'No Tag' (the protein does not have a tag). title: tag status of the solubilized protein from_schema: https://w3id.org/evorao/ rank: 1000 alias: tagStatusOfTheSolubilizedProtein owner: Protein domain_of: - Protein range: string required: false multivalued: false typeOfFunctionalCharacterization: name: typeOfFunctionalCharacterization description: Refers to the classification of a protein based on the specific type of functional analysis performed to determine its biological activities and roles. Possible values include 'Enzymatic' (the protein has been characterized for its enzyme activity) and 'Antigenic' (the protein has been characterized for its ability to elicit an immune response). title: type of functional Characterization from_schema: https://w3id.org/evorao/ rank: 1000 alias: typeOfFunctionalCharacterization owner: Protein domain_of: - Protein range: string required: false recommended: true multivalued: true equals_string_in: - Enzymatic - Antigenic iataClassification: name: iataClassification description: The corresponding International Air Transport Association (IATA)'s category for this Product. title: IATA classification from_schema: https://w3id.org/evorao/ close_mappings: - wdp:P238 - schema:iataCode rank: 1000 alias: iataClassification owner: Protein domain_of: - Product range: IataClassification required: true multivalued: false shippingConditions: name: shippingConditions description: Specification of the terms and parameters for transporting. title: shipping conditions from_schema: https://w3id.org/evorao/ close_mappings: - schema:shippingConditions rank: 1000 alias: shippingConditions owner: Protein domain_of: - Product range: string required: true multivalued: false materialSafetyDataSheet: name: materialSafetyDataSheet description: A Material Safety Data Sheet (MSDS) or Safety Data Sheet (SDS) is a standardized document that contains crucial occupational safety and health information related to the product. title: material safety data sheet comments: - The MSD is a document that provides detailed information about the properties, hazards, handling, storage, and emergency procedures related to the use of a chemical or substance. from_schema: https://w3id.org/evorao/ rank: 1000 alias: materialSafetyDataSheet owner: Protein domain_of: - Product range: MaterialSafetyDataSheet required: false multivalued: false originator: name: originator description: The individual or organization responsible for the original discovery, isolation, or creation of an item, providing information about the source or origin of the sample. title: originator from_schema: https://w3id.org/evorao/ close_mappings: - dct:provenance rank: 1000 alias: originator owner: Protein domain_of: - Product range: Originator required: false multivalued: false storageConditions: name: storageConditions description: Specifies the conditions under which the product has to be stored to maintain stability and integrity, such as temperature, buffer, and other environmental factors. title: storage conditions comments: - e.g, could be a xsd:string in enumeration ('Freeze Dried', 'Liquid Nitrogen', 'Viral Storage Medium -20C', 'Viral Storage Medium -80C', 'Living plant material (>= +4°C)', 'Gas Phase', 'Ethanol -20C', 'Ethanol -80C', 'Dried'). from_schema: https://w3id.org/evorao/ rank: 1000 alias: storageConditions owner: Protein domain_of: - Product range: string required: true multivalued: false thirdPartyDistributionConsent: name: thirdPartyDistributionConsent description: Indicates whether the biological material can be distributed without restriction to third parties, as indicated by the ABS permit, in case an ABS permit is required. title: third party distribution consent from_schema: https://w3id.org/evorao/ rank: 1000 alias: thirdPartyDistributionConsent owner: Protein domain_of: - Product range: boolean required: false multivalued: false usageRestrictions: name: usageRestrictions description: Specifies any limitations or conditions on the use of the biological material, including restrictions on research, commercial use, or distribution, considering any potential concerns about the related genetic material. title: usage restrictions from_schema: https://w3id.org/evorao/ rank: 1000 alias: usageRestrictions owner: Protein domain_of: - Product range: string required: false multivalued: false preparationTechnique: name: preparationTechnique description: The technique, method, or procedure employed to obtain or prepare the material prior to its use or storage. title: preparation technique from_schema: https://w3id.org/evorao/ rank: 1000 alias: preparationTechnique owner: Protein domain_of: - Product range: string required: false multivalued: false accessPointUrl: name: accessPointUrl description: The URL that permits to access to the product/service detailed description page on the provider's website and/or allows to place an order about it or at least describe the process to place an order/enquiry. title: access point URL from_schema: https://w3id.org/evorao/ exact_mappings: - schema:serviceURL related_mappings: - dcat:landingPage broad_mappings: - schema:url rank: 1000 is_a: iri alias: accessPointUrl owner: Protein domain_of: - ProductOrService range: uri required: true multivalued: false refSku: name: refSku description: The reference or the stock keeping unit of the service or item provided in the provider's catalogue. title: ref SKU from_schema: https://w3id.org/evorao/ exact_mappings: - schema:sku close_mappings: - dwc:catalogNumber broad_mappings: - dct:identifier - schema:identifier rank: 1000 is_a: identifier alias: refSku owner: Protein domain_of: - ProductOrService range: string required: true multivalued: false unitDefinition: name: unitDefinition description: A short description of what is delivered when one unit of this item is ordered, such as quantity or packaging. title: unit definition comments: - 'The description of what will be delivered to the end-user (e.g.: packaging, quantity...).' from_schema: https://w3id.org/evorao/ related_mappings: - dct:format rank: 1000 alias: unitDefinition owner: Protein domain_of: - ProductOrService range: string required: false recommended: true multivalued: false category: name: category description: The main category of the service or product. title: category from_schema: https://w3id.org/evorao/ close_mappings: - schema:category - gr:category rank: 1000 slot_uri: dcat:theme alias: category owner: Protein domain_of: - ProductOrService range: ProductCategory required: true multivalued: false additionalCategory: name: additionalCategory description: Any category apart from its main category in which this product or service can fit. title: additional category from_schema: https://w3id.org/evorao/ close_mappings: - schema:additionalType rank: 1000 is_a: category alias: additionalCategory owner: Protein domain_of: - ProductOrService range: ProductCategory required: false recommended: true multivalued: true unitCost: name: unitCost description: The cost per access for one unit as defined by the unit definition. title: unit cost comments: - The cost per access may not always be defined as a fixed numerical value. In some cases, the price is conditional or available only upon request. To accommodate such cases, descriptive information should be provided through the property EVORAO:unitCostNote (xsd:string). This allows handling of cost statements such as “on request,” “depends on volume,” or “free access for academics,” which cannot be captured by a simple numeric value. from_schema: https://w3id.org/evorao/ close_mappings: - schema:price rank: 1000 alias: unitCost owner: Protein domain_of: - ProductOrService range: decimal required: false recommended: true multivalued: false unitCostCurrency: name: unitCostCurrency description: The currency in which the unit cost is expressed, following ISO 4217 three-letter codes (e.g., EUR, USD). title: unit cost currency from_schema: https://w3id.org/evorao/ close_mappings: - schema:priceCurrency rank: 1000 ifabsent: string(EUR) alias: unitCostCurrency owner: Protein domain_of: - ProductOrService range: string required: false recommended: true multivalued: false unitCostNote: name: unitCostNote description: A free-text note describing special conditions or cases where the cost cannot be represented by a numerical value (e.g., on request, free for academics, depends on volume). title: unit cost note from_schema: https://w3id.org/evorao/ rank: 1000 alias: unitCostNote owner: Protein domain_of: - ProductOrService range: string required: false multivalued: false qualityGrading: name: qualityGrading description: Information that permits to assess the quality level of what will be provided. title: quality grading from_schema: https://w3id.org/evorao/ close_mappings: - bao:0002662 - sio:000217 rank: 1000 alias: qualityGrading owner: Protein domain_of: - ProductOrService range: string required: false multivalued: false pathogenIdentification: name: pathogenIdentification description: The identification of the pathogen or group of pathogens (e.g; name, taxon identification, etc.) related to the current item. title: pathogen identification comments: - 'The pathogen identification contains information about name and taxon but in some cases(e.g: FAIRSHARING) there may have no direct pathogen related but simply a taxonomic information .... the default value should be the root of virology: Viruses.' from_schema: https://w3id.org/evorao/ rank: 1000 alias: pathogenIdentification owner: Protein domain_of: - ProductOrService range: PathogenIdentification required: true multivalued: true doi: name: doi description: A Digital Object Identifier (DOI) that can be related. title: DOI from_schema: https://w3id.org/evorao/ exact_mappings: - wdp:P356 close_mappings: - wdp:P356 - reproduceme:doi broad_mappings: - dct:bibliographicCitation rank: 1000 alias: doi owner: Protein domain_of: - ProductOrService - Publication range: Doi required: false multivalued: true riskGroup: name: riskGroup description: The highest risk group related to this resource. The risk group of a biological agent guiding its initial handling in labs according to the risk group classification defined by the WHO laboratory biosafety manual. title: risk group comments: - The Risk Group (RG) assignments to an item are jurisdiction-dependent and may differ between countries/regions and by material form (e.g., live isolate, inactivated preparation, nucleic acid). Assignments can also change over time. We store here a single reference assignment; users must verify the current, locally applicable assignment with their competent authority. from_schema: https://w3id.org/evorao/ exact_mappings: - wdp:P12663 related_mappings: - bao:0002826 rank: 1000 alias: riskGroup owner: Protein domain_of: - ProductOrService range: RiskGroup required: false recommended: true multivalued: false biosafetyLevel: name: biosafetyLevel description: The level of biocontainment required or applied in the facility where the biological agent is manipulated. title: biosafety level comments: - The Biosafety Level (BSL) reflects the operational safety measures implemented, which may differ from the intrinsic risk defined by the agent’s Risk Group (RG). from_schema: https://w3id.org/evorao/ exact_mappings: - wdp:P1604 - bao:0002826 rank: 1000 alias: biosafetyLevel owner: Protein domain_of: - ProductOrService range: BiosafetyLevel required: false multivalued: false biosafetyRestrictions: name: biosafetyRestrictions description: Information about guidelines and regulations designed to prevent the exposure to or release of potentially harmful biological agents. It thereby contributes to protecting people and the environment from biohazards while accessing this product or service. title: biosafety restrictions from_schema: https://w3id.org/evorao/ related_mappings: - bao:0002826 - wdp:P12663 - wdp:P1604 rank: 1000 alias: biosafetyRestrictions owner: Protein domain_of: - ProductOrService range: string required: false multivalued: false canBeUsedToProduceGmo: name: canBeUsedToProduceGmo description: Indicates if the current service or product can be used to produce GMO. title: can be used to produce GMO comments: - Set to TRUE if it can produce GMO. - It is recommended to have a value for this field, no value will be understood as unknown. from_schema: https://w3id.org/evorao/ broad_mappings: - schema:potentialUse rank: 1000 alias: canBeUsedToProduceGmo owner: Protein domain_of: - ProductOrService range: boolean required: false recommended: true multivalued: false provider: name: provider description: A provider of this product or service, as a specific organization. title: provider from_schema: https://w3id.org/evorao/ exact_mappings: - sio:000066 close_mappings: - schema:provider - dct:publisher rank: 1000 alias: provider owner: Protein domain_of: - ProductOrService range: Provider required: true multivalued: false collection: name: collection description: The collection(s) to which belongs this item. title: collection from_schema: https://w3id.org/evorao/ related_mappings: - afop:AFX_0002720 broad_mappings: - dct:isPartOf rank: 1000 alias: collection owner: Protein domain_of: - ProductOrService range: Collection required: true multivalued: true keywords: name: keywords description: List of terms used to tag and categorize this Item. title: keywords from_schema: https://w3id.org/evorao/ exact_mappings: - schema:keywords close_mappings: - dcat:keyword rank: 1000 alias: keywords owner: Protein domain_of: - ProductOrService range: Keyword required: true multivalued: true availability: name: availability description: The state or condition in which this item is accessible and ready for use or can be obtained. title: availability comments: - Possible availabilities may differ from a project to another. from_schema: https://w3id.org/evorao/ close_mappings: - schema:availability - dct:available rank: 1000 ifabsent: string(on request) alias: availability owner: Protein domain_of: - ProductOrService range: string required: true multivalued: false complementaryDocument: name: complementaryDocument description: Any additional documents that provide supplementary information, instructions, or guidelines relevant to the use of this item. title: complementary document from_schema: https://w3id.org/evorao/ close_mappings: - sepio:0000442 rank: 1000 alias: complementaryDocument owner: Protein domain_of: - ProductOrService range: Document required: false multivalued: true technicalRecommendation: name: technicalRecommendation description: Expert advice or guidelines provided to ensure the optimal use, performance, and maintenance of what is provided, including best practices, troubleshooting tips, and procedural instructions. title: technical recommendation from_schema: https://w3id.org/evorao/ rank: 1000 alias: technicalRecommendation owner: Protein domain_of: - ProductOrService range: string required: false multivalued: false productPicture: name: productPicture description: A picture that can represent the item. title: product picture from_schema: https://w3id.org/evorao/ rank: 1000 alias: productPicture owner: Protein domain_of: - ProductOrService range: Image required: false multivalued: true externalRelatedReference: name: externalRelatedReference description: A reference that permits to retrieve another related item from an external provider. title: external related reference from_schema: https://w3id.org/evorao/ broad_mappings: - dct:references rank: 1000 alias: externalRelatedReference owner: Protein domain_of: - ProductOrService range: ExternalRelatedReference required: false multivalued: true certification: name: certification description: Any certification related to the current product or service; e.g., ISO certification. title: certification from_schema: https://w3id.org/evorao/ exact_mappings: - schema:hasCertification close_mappings: - dct:conformsTo rank: 1000 alias: certification owner: Protein domain_of: - ProductOrService range: Certification required: false multivalued: true internalReference: name: internalReference description: Any reference or indication to be used for local retrieval purpose. title: internal reference from_schema: https://w3id.org/evorao/ broad_mappings: - dct:references rank: 1000 alias: internalReference owner: Protein domain_of: - ProductOrService range: string required: false multivalued: false note: name: note description: An aditional information as a textual comment. title: note from_schema: https://w3id.org/evorao/ rank: 1000 slot_uri: skos:note alias: note owner: Protein domain_of: - ProductOrService range: string required: false multivalued: false contactPoint: name: contactPoint description: An information that allows someone to establish communication. title: contact point from_schema: https://w3id.org/evorao/ exact_mappings: - schema:contactPoint rank: 1000 slot_uri: dcat:contactPoint alias: contactPoint owner: Protein domain_of: - ProductOrService - PersonOrOrganization range: ContactPoint required: false recommended: true multivalued: false fundingSource: name: fundingSource description: A program, grant, or project providing financial support for the access or use of the product or service, either fully or partially. title: funding source comments: - Links a product or service to one or more financial mechanisms, initiatives, or grants that enable or support its provision or access. from_schema: https://w3id.org/evorao/ exact_mappings: - schema:funding rank: 1000 alias: fundingSource owner: Protein domain_of: - ProductOrService range: FundingSource required: false multivalued: true title: name: title description: A name given to the resource. title: title comments: - The title of the item should be as short and descriptive as possible. - 'E.g. for virus products it should basically be based on the following Pattern: ''Virus name'', ''virus host type'', ''collection year'', ''country of collection'' ex ''suspected epidemiological origin'', ''genotype'', ''strain'', ''variant name or specific feature.' from_schema: https://w3id.org/evorao/ exact_mappings: - schema:name - rdfs:label rank: 1000 slot_uri: dct:title alias: title owner: Protein domain_of: - Dataset - DataService - Publication - Term - License - Certification - FundingSource range: string required: true multivalued: false description: name: description description: A short explanation of the characteristics, features, or nature of the current item. title: description comments: - Describe this item in few lines. This description will serve as a summary to present the resource. from_schema: https://w3id.org/evorao/ exact_mappings: - schema:description rank: 1000 slot_uri: dct:description alias: description owner: Protein domain_of: - Dataset - DataService - Term - PersonOrOrganization - File - ContactPoint - License - Certification - FundingSource range: string required: true recommended: true multivalued: false version: name: version description: The version indicator (name or identifier) of a resource. title: version from_schema: https://w3id.org/evorao/ exact_mappings: - pav:version close_mappings: - wdp:P393 - schema:version related_mappings: - schema:identifier rank: 1000 slot_uri: dcat:version alias: version owner: Protein domain_of: - Dataset - Version - Taxonomy range: string required: false recommended: true multivalued: false keyword: name: keyword description: A keyword or tag describing the resource. title: keyword from_schema: https://w3id.org/evorao/ rank: 1000 slot_uri: dcat:keyword alias: keyword owner: Protein domain_of: - Resource range: string required: false multivalued: true dateIssued: name: dateIssued description: Date of formal issuance (e.g., publication) of the resource. title: date issued comments: - encoded using the relevant ISO 8601 Date and Time compliant string [DATETIME]. from_schema: https://w3id.org/evorao/ exact_mappings: - sepio:0000051 close_mappings: - schema:datePublished - schema:dateCreated rank: 1000 slot_uri: dct:issued alias: dateIssued owner: Protein domain_of: - Resource range: datetime required: false multivalued: false dateModified: name: dateModified description: Most recent date on which the resource was changed, updated or modified. title: date modified comments: - encoded using the relevant ISO 8601 Date and Time compliant string [DATETIME]. from_schema: https://w3id.org/evorao/ exact_mappings: - sepio:0000036 close_mappings: - schema:dateModified rank: 1000 slot_uri: dct:modified alias: dateModified owner: Protein domain_of: - Resource range: datetime required: false multivalued: false identifier: name: identifier description: A unique identifier of the resource being described or cataloged. title: identifier comments: - The identifier is a text string which is assigned to the resource to provide an unambiguous reference within a particular context. Persistent identifiers should be provided as HTTP URIs. from_schema: https://w3id.org/evorao/ exact_mappings: - schema:identifier rank: 1000 slot_uri: dct:identifier alias: identifier owner: Protein domain_of: - Resource range: string required: false multivalued: true iri: name: iri description: International Resource Identifier (IRI) that uniquely identifies or refers to the resource. IRIs include URIs, and URIs include URLs. title: IRI comments: - An IRI is a global identifier standardized by IETF RFC 3987. It may or may not be resolvable on the web. IRIs include URIs, and URIs include URLs. from_schema: https://w3id.org/evorao/ close_mappings: - biolink:iri related_mappings: - mi:url narrow_mappings: - schema:url rank: 1000 is_a: identifier alias: iri owner: Protein domain_of: - Resource range: uri required: false multivalued: true publisher: name: publisher description: The entity responsible for making the resource available. title: publisher comments: - Resources of type foaf:Agent like EVORAO:PersonOrOrganization are recommended as values for this property. from_schema: https://w3id.org/evorao/ rank: 1000 slot_uri: dct:publisher alias: publisher owner: Protein domain_of: - Resource range: PersonOrOrganization required: false multivalued: false ```

This site is open source. Improve this page.