Biological entity that causes disease in its host, which is typically an infectious microorganism or agent, such as a virus, bacterium, protozoan, prion, viroid, or fungus.
URI: EVORAO:Pathogen
classDiagram
class Pathogen
click Pathogen href "../Pathogen"
Product <|-- Pathogen
click Product href "../Product"
Pathogen <|-- Virus
click Virus href "../Virus"
Pathogen <|-- Bacterium
click Bacterium href "../Bacterium"
Pathogen <|-- Fungus
click Fungus href "../Fungus"
Pathogen <|-- Protozoan
click Protozoan href "../Protozoan"
Pathogen <|-- Viroid
click Viroid href "../Viroid"
Pathogen <|-- Prion
click Prion href "../Prion"
Pathogen : accessPointUrl
Pathogen : additionalCategory
Pathogen --> "* _recommended_" ProductCategory : additionalCategory
click ProductCategory href "../ProductCategory"
Pathogen : availability
Pathogen : biologicalMaterialOrigin
Pathogen --> "1" BiologicalMaterialOrigin : biologicalMaterialOrigin
click BiologicalMaterialOrigin href "../BiologicalMaterialOrigin"
Pathogen : biosafetyLevel
Pathogen --> "0..1" BiosafetyLevel : biosafetyLevel
click BiosafetyLevel href "../BiosafetyLevel"
Pathogen : biosafetyRestrictions
Pathogen : canBeUsedToProduceGmo
Pathogen : category
Pathogen --> "1" ProductCategory : category
click ProductCategory href "../ProductCategory"
Pathogen : certification
Pathogen --> "*" Certification : certification
click Certification href "../Certification"
Pathogen : clinicalInformation
Pathogen : collection
Pathogen --> "1..*" Collection : collection
click Collection href "../Collection"
Pathogen : complementaryDocument
Pathogen --> "*" Document : complementaryDocument
click Document href "../Document"
Pathogen : contactPoint
Pathogen --> "0..1 _recommended_" ContactPoint : contactPoint
click ContactPoint href "../ContactPoint"
Pathogen : cultivability
Pathogen : dateIssued
Pathogen : dateModified
Pathogen : description
Pathogen : doi
Pathogen --> "*" Doi : doi
click Doi href "../Doi"
Pathogen : externalRelatedReference
Pathogen --> "*" ExternalRelatedReference : externalRelatedReference
click ExternalRelatedReference href "../ExternalRelatedReference"
Pathogen : fundingSource
Pathogen --> "*" FundingSource : fundingSource
click FundingSource href "../FundingSource"
Pathogen : genomeSequencing
Pathogen : iataClassification
Pathogen --> "1" IataClassification : iataClassification
click IataClassification href "../IataClassification"
Pathogen : identificationTechnique
Pathogen : identifier
Pathogen : infectivity
Pathogen : infectivityTest
Pathogen : internalReference
Pathogen : iri
Pathogen : isolationConditions
Pathogen : isolationHost
Pathogen --> "*" IsolationHost : isolationHost
click IsolationHost href "../IsolationHost"
Pathogen : isolationTechnique
Pathogen : keyword
Pathogen : keywords
Pathogen --> "1..*" Keyword : keywords
click Keyword href "../Keyword"
Pathogen : letterOfAuthority
Pathogen : materialSafetyDataSheet
Pathogen --> "0..1" MaterialSafetyDataSheet : materialSafetyDataSheet
click MaterialSafetyDataSheet href "../MaterialSafetyDataSheet"
Pathogen : note
Pathogen : originator
Pathogen --> "0..1" Originator : originator
click Originator href "../Originator"
Pathogen : passage
Pathogen : pathogenIdentification
Pathogen --> "1..*" PathogenIdentification : pathogenIdentification
click PathogenIdentification href "../PathogenIdentification"
Pathogen : preparationTechnique
Pathogen : productionCellLine
Pathogen --> "*" ProductionCellLine : productionCellLine
click ProductionCellLine href "../ProductionCellLine"
Pathogen : productPicture
Pathogen --> "*" Image : productPicture
click Image href "../Image"
Pathogen : propagationHost
Pathogen --> "*" PropagationHost : propagationHost
click PropagationHost href "../PropagationHost"
Pathogen : provider
Pathogen --> "1" Provider : provider
click Provider href "../Provider"
Pathogen : publisher
Pathogen --> "0..1" PersonOrOrganization : publisher
click PersonOrOrganization href "../PersonOrOrganization"
Pathogen : qualityGrading
Pathogen : refSku
Pathogen : riskGroup
Pathogen --> "0..1 _recommended_" RiskGroup : riskGroup
click RiskGroup href "../RiskGroup"
Pathogen : sequence
Pathogen --> "1..* _recommended_" Sequence : sequence
click Sequence href "../Sequence"
Pathogen : shippingConditions
Pathogen : storageConditions
Pathogen : suspectedEpidemiologicalOrigin
Pathogen --> "*" GeographicalOrigin : suspectedEpidemiologicalOrigin
click GeographicalOrigin href "../GeographicalOrigin"
Pathogen : technicalRecommendation
Pathogen : thirdPartyDistributionConsent
Pathogen : titer
Pathogen : title
Pathogen : transmissionMethod
Pathogen --> "*" TransmissionMethod : transmissionMethod
click TransmissionMethod href "../TransmissionMethod"
Pathogen : unitCost
Pathogen : unitCostCurrency
Pathogen : unitCostNote
Pathogen : unitDefinition
Pathogen : usageRestrictions
Pathogen : version
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| biologicalMaterialOrigin | 1 BiologicalMaterialOrigin |
Information about the origin of the biological material, essential for access… | direct |
| suspectedEpidemiologicalOrigin | * GeographicalOrigin |
The potential geographical or environmental source from which the pathogen is… | direct |
| isolationHost | * IsolationHost |
The host organism from which the pathogen was originally isolated | direct |
| productionCellLine | * ProductionCellLine |
The cell line used for the production or propagation of the pathogen, detaili… | direct |
| propagationHost | * PropagationHost |
The host organism that propagates the pathogen | direct |
| transmissionMethod | * TransmissionMethod |
The method or route through which the pathogen is transmitted from one host t… | direct |
| sequence | 1..* recommended Sequence |
The related sequence information from a sequence provider or in fasta format | direct |
| cultivability | 1 String |
The ability of the pathogen to be cultivated or grown in laboratory condition… | direct |
| clinicalInformation | 0..1 String |
Details about the clinical aspects of the pathogen, including symptoms, sever… | direct |
| identificationTechnique | 0..1 String |
A method or procedure used to detect, identify, and confirm the presence of a… | direct |
| infectivity | 1 String |
Indicates the ability of the pathogen to establish an infection in a host org… | direct |
| infectivityTest | 0..1 String |
The description of the completed infectivity test, providing details on the m… | direct |
| isolationTechnique | 0..1 String |
The specific method or procedure used to isolate the pathogen from a host org… | direct |
| isolationConditions | 0..1 String |
The environmental and procedural conditions under which the pathogen was isol… | direct |
| letterOfAuthority | 0..1 recommended String |
Indicate whether a Letter of Authority is required, confirming the necessity … | direct |
| passage | 0..1 String |
The number of times the pathogen was cultured through serial passage, a proce… | direct |
| genomeSequencing | 1 String |
The extent of the pathogen’s genetic material that has been sequenced, with p… | direct |
| titer | 1 String |
The titer value, its corresponding unit, and the method of quantification (e | direct |
| iataClassification | 1 IataClassification |
The corresponding International Air Transport Association (IATA)’s category f… | Product |
| shippingConditions | 1 String |
Specification of the terms and parameters for transporting | Product |
| materialSafetyDataSheet | 0..1 MaterialSafetyDataSheet |
A Material Safety Data Sheet (MSDS) or Safety Data Sheet (SDS) is a standardi… | Product |
| originator | 0..1 Originator |
The individual or organization responsible for the original discovery, isolat… | Product |
| storageConditions | 1 String |
Specifies the conditions under which the product has to be stored to maintain… | Product |
| thirdPartyDistributionConsent | 0..1 Boolean |
Indicates whether the biological material can be distributed without restrict… | Product |
| usageRestrictions | 0..1 String |
Specifies any limitations or conditions on the use of the biological material… | Product |
| preparationTechnique | 0..1 String |
The technique, method, or procedure employed to obtain or prepare the materia… | Product |
| accessPointUrl | 1 Uri |
The URL that permits to access to the product/service detailed description pa… | ProductOrService |
| refSku | 1 String |
The reference or the stock keeping unit of the service or item provided in th… | ProductOrService |
| unitDefinition | 0..1 recommended String |
A short description of what is delivered when one unit of this item is ordere… | ProductOrService |
| category | 1 ProductCategory |
The main category of the service or product | ProductOrService |
| additionalCategory | * recommended ProductCategory |
Any category apart from its main category in which this product or service ca… | ProductOrService |
| unitCost | 0..1 recommended Decimal |
The cost per access for one unit as defined by the unit definition | ProductOrService |
| unitCostCurrency | 0..1 recommended String |
The currency in which the unit cost is expressed, following ISO 4217 three-le… | ProductOrService |
| unitCostNote | 0..1 String |
A free-text note describing special conditions or cases where the cost cannot… | ProductOrService |
| qualityGrading | 0..1 String |
Information that permits to assess the quality level of what will be provided | ProductOrService |
| pathogenIdentification | 1..* PathogenIdentification |
The identification of the pathogen or group of pathogens (e | ProductOrService |
| doi | * Doi |
A Digital Object Identifier (DOI) that can be related | ProductOrService |
| riskGroup | 0..1 recommended RiskGroup |
The highest risk group related to this resource | ProductOrService |
| biosafetyLevel | 0..1 BiosafetyLevel |
The level of biocontainment required or applied in the facility where the bio… | ProductOrService |
| biosafetyRestrictions | 0..1 String |
Information about guidelines and regulations designed to prevent the exposure… | ProductOrService |
| canBeUsedToProduceGmo | 0..1 recommended Boolean |
Indicates if the current service or product can be used to produce GMO | ProductOrService |
| provider | 1 Provider |
A provider of this product or service, as a specific organization | ProductOrService |
| collection | 1..* Collection |
The collection(s) to which belongs this item | ProductOrService |
| keywords | 1..* Keyword |
List of terms used to tag and categorize this Item | ProductOrService |
| availability | 1 String |
The state or condition in which this item is accessible and ready for use or … | ProductOrService |
| complementaryDocument | * Document |
Any additional documents that provide supplementary information, instructions… | ProductOrService |
| technicalRecommendation | 0..1 String |
Expert advice or guidelines provided to ensure the optimal use, performance, … | ProductOrService |
| productPicture | * Image |
A picture that can represent the item | ProductOrService |
| externalRelatedReference | * ExternalRelatedReference |
A reference that permits to retrieve another related item from an external pr… | ProductOrService |
| certification | * Certification |
Any certification related to the current product or service; e | ProductOrService |
| internalReference | 0..1 String |
Any reference or indication to be used for local retrieval purpose | ProductOrService |
| note | 0..1 String |
An aditional information as a textual comment | ProductOrService |
| contactPoint | 0..1 recommended ContactPoint |
An information that allows someone to establish communication | ProductOrService |
| fundingSource | * FundingSource |
A program, grant, or project providing financial support for the access or us… | ProductOrService |
| title | 1 String |
A name given to the resource | Dataset |
| description | 1 recommended String |
A short explanation of the characteristics, features, or nature of the curren… | Dataset |
| version | 0..1 recommended String |
The version indicator (name or identifier) of a resource | Dataset |
| keyword | * String |
A keyword or tag describing the resource | Resource |
| dateIssued | 0..1 Datetime |
Date of formal issuance (e | Resource |
| dateModified | 0..1 Datetime |
Most recent date on which the resource was changed, updated or modified | Resource |
| identifier | * String |
A unique identifier of the resource being described or cataloged | Resource |
| iri | * Uri |
International Resource Identifier (IRI) that uniquely identifies or refers to… | Resource |
| publisher | 0..1 PersonOrOrganization |
The entity responsible for making the resource available | Resource |
| Mapping Type | Mapped Value |
|---|---|
| self | EVORAO:Pathogen |
| native | EVORAO:Pathogen |
| related | schema:infectiousAgent, schema:InfectiousAgentClass, doid:0050117, mondo:0005550, schema:infectiousAgent, schema:InfectiousAgentClass, doid:0050117, mondo:0005550 |
| close | wd:Q170065, ncit:C80324, sio:010414, ido:0000528, apollo:00000237, wd:Q170065, ncit:C80324, sio:010414, ido:0000528, apollo:00000237 |