EVORAO

Class: Sequence reference (SequenceReference)

A reference that permits to retrieve the sequence information from a sequence provider.

URI: EVORAO:SequenceReference

 classDiagram
    class SequenceReference
    click SequenceReference href "../SequenceReference"
      Resource <|-- SequenceReference
        click Resource href "../Resource"
      
      SequenceReference : accessionNumber
        
      SequenceReference : dateIssued
        
      SequenceReference : dateModified
        
      SequenceReference : identifier
        
      SequenceReference : iri
        
      SequenceReference : keyword
        
      SequenceReference : publisher
        
          
    
    
    SequenceReference --> "0..1" PersonOrOrganization : publisher
    click PersonOrOrganization href "../PersonOrOrganization"

        
      SequenceReference : sequenceProvider

Inheritance

Slots

Name Cardinality and Range Description Inheritance
accessionNumber 1
String		 The sequence ID that permits to retrieve the sequence information from the se… direct
sequenceProvider 1
String		 The name of the sequence provider within the list of accepted sequence provid… direct
keyword *
String		 A keyword or tag describing the resource Resource
dateIssued 0..1
Datetime		 Date of formal issuance (e Resource
dateModified 0..1
Datetime		 Most recent date on which the resource was changed, updated or modified Resource
identifier *
String		 A unique identifier of the resource being described or cataloged Resource
iri *
Uri		 International Resource Identifier (IRI) that uniquely identifies or refers to… Resource
publisher 0..1
PersonOrOrganization		 The entity responsible for making the resource available Resource

Usages

used by used in type used
Sequence sequenceReference range SequenceReference
Antibody sequenceReference range SequenceReference
Hybridoma sequenceReference range SequenceReference

Comments

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self EVORAO:SequenceReference
native EVORAO:SequenceReference

LinkML Source

Direct

```yaml name: SequenceReference description: A reference that permits to retrieve the sequence information from a sequence provider. title: Sequence reference comments: - A work on making it a subclass of External related reference might be consistent and beneficial for data structuration but special attention will have to be take to ensure it remains consistent with the actual the use cases for users. from_schema: https://w3id.org/evorao/ is_a: Resource slots: - accessionNumber - sequenceProvider slot_usage: accessionNumber: name: accessionNumber description: The sequence ID that permits to retrieve the sequence information from the sequence provider. title: accession number related_mappings: - dct:identifier narrow_mappings: - ncit:P102 broad_mappings: - schema:identifier is_a: identifier domain_of: - SequenceReference range: string required: true multivalued: false sequenceProvider: name: sequenceProvider description: The name of the sequence provider within the list of accepted sequence providers. title: sequence provider close_mappings: - dct:publisher domain_of: - SequenceReference range: string required: true multivalued: false ```

Induced

```yaml name: SequenceReference description: A reference that permits to retrieve the sequence information from a sequence provider. title: Sequence reference comments: - A work on making it a subclass of External related reference might be consistent and beneficial for data structuration but special attention will have to be take to ensure it remains consistent with the actual the use cases for users. from_schema: https://w3id.org/evorao/ is_a: Resource slot_usage: accessionNumber: name: accessionNumber description: The sequence ID that permits to retrieve the sequence information from the sequence provider. title: accession number related_mappings: - dct:identifier narrow_mappings: - ncit:P102 broad_mappings: - schema:identifier is_a: identifier domain_of: - SequenceReference range: string required: true multivalued: false sequenceProvider: name: sequenceProvider description: The name of the sequence provider within the list of accepted sequence providers. title: sequence provider close_mappings: - dct:publisher domain_of: - SequenceReference range: string required: true multivalued: false attributes: accessionNumber: name: accessionNumber description: The sequence ID that permits to retrieve the sequence information from the sequence provider. title: accession number from_schema: https://w3id.org/evorao/ related_mappings: - dct:identifier narrow_mappings: - ncit:P102 broad_mappings: - schema:identifier rank: 1000 is_a: identifier alias: accessionNumber owner: SequenceReference domain_of: - SequenceReference range: string required: true multivalued: false sequenceProvider: name: sequenceProvider description: The name of the sequence provider within the list of accepted sequence providers. title: sequence provider from_schema: https://w3id.org/evorao/ close_mappings: - dct:publisher rank: 1000 alias: sequenceProvider owner: SequenceReference domain_of: - SequenceReference range: string required: true multivalued: false equals_string_in: - ENA - GenBank - DDBJ - UniProt keyword: name: keyword description: A keyword or tag describing the resource. title: keyword from_schema: https://w3id.org/evorao/ rank: 1000 slot_uri: dcat:keyword alias: keyword owner: SequenceReference domain_of: - Resource range: string required: false multivalued: true dateIssued: name: dateIssued description: Date of formal issuance (e.g., publication) of the resource. title: date issued comments: - encoded using the relevant ISO 8601 Date and Time compliant string [DATETIME]. from_schema: https://w3id.org/evorao/ exact_mappings: - sepio:0000051 close_mappings: - schema:datePublished - schema:dateCreated rank: 1000 slot_uri: dct:issued alias: dateIssued owner: SequenceReference domain_of: - Resource range: datetime required: false multivalued: false dateModified: name: dateModified description: Most recent date on which the resource was changed, updated or modified. title: date modified comments: - encoded using the relevant ISO 8601 Date and Time compliant string [DATETIME]. from_schema: https://w3id.org/evorao/ exact_mappings: - sepio:0000036 close_mappings: - schema:dateModified rank: 1000 slot_uri: dct:modified alias: dateModified owner: SequenceReference domain_of: - Resource range: datetime required: false multivalued: false identifier: name: identifier description: A unique identifier of the resource being described or cataloged. title: identifier comments: - The identifier is a text string which is assigned to the resource to provide an unambiguous reference within a particular context. Persistent identifiers should be provided as HTTP URIs. from_schema: https://w3id.org/evorao/ exact_mappings: - schema:identifier rank: 1000 slot_uri: dct:identifier alias: identifier owner: SequenceReference domain_of: - Resource range: string required: false multivalued: true iri: name: iri description: International Resource Identifier (IRI) that uniquely identifies or refers to the resource. IRIs include URIs, and URIs include URLs. title: IRI comments: - An IRI is a global identifier standardized by IETF RFC 3987. It may or may not be resolvable on the web. IRIs include URIs, and URIs include URLs. from_schema: https://w3id.org/evorao/ close_mappings: - biolink:iri related_mappings: - mi:url narrow_mappings: - schema:url rank: 1000 is_a: identifier alias: iri owner: SequenceReference domain_of: - Resource range: uri required: false multivalued: true publisher: name: publisher description: The entity responsible for making the resource available. title: publisher comments: - Resources of type foaf:Agent like EVORAO:PersonOrOrganization are recommended as values for this property. from_schema: https://w3id.org/evorao/ rank: 1000 slot_uri: dct:publisher alias: publisher owner: SequenceReference domain_of: - Resource range: PersonOrOrganization required: false multivalued: false ```
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