Class: Biological material origin (BiologicalMaterialOrigin)
Information about the origin of the biological material, compulsory for access, utilization, and benefit-sharing of genetic resources in compliance with the Nagoya Protocol.
URI: EVORAO:BiologicalMaterialOrigin
classDiagram
class BiologicalMaterialOrigin
click BiologicalMaterialOrigin href "../BiologicalMaterialOrigin"
Resource <|-- BiologicalMaterialOrigin
click Resource href "../Resource"
BiologicalMaterialOrigin : biologicalPartOrigin
BiologicalMaterialOrigin --> "1..*" BiologicalPartOrigin : biologicalPartOrigin
click BiologicalPartOrigin href "../BiologicalPartOrigin"
BiologicalMaterialOrigin : biologicalSourceType
BiologicalMaterialOrigin : dateIssued
BiologicalMaterialOrigin : dateModified
BiologicalMaterialOrigin : identifier
BiologicalMaterialOrigin : iri
BiologicalMaterialOrigin : keyword
BiologicalMaterialOrigin : publisher
BiologicalMaterialOrigin --> "0..1" PersonOrOrganization : publisher
click PersonOrOrganization href "../PersonOrOrganization"
BiologicalMaterialOrigin : recombinantMaterial
Inheritance
Slots
Usages
Schema Source
- from schema: https://w3id.org/evorao/
Mappings
| Mapping Type |
Mapped Value |
| self |
EVORAO:BiologicalMaterialOrigin |
| native |
EVORAO:BiologicalMaterialOrigin |
| related |
snomed:115668003, snomed:115668003 |
| close |
sepio:0000058, sepio:0000058 |
LinkML Source
Direct
```yaml
name: BiologicalMaterialOrigin
description: Information about the origin of the biological material, compulsory for
access, utilization, and benefit-sharing of genetic resources in compliance with
the Nagoya Protocol.
title: Biological material origin
from_schema: https://w3id.org/evorao/
close_mappings:
- sepio:0000058
- sepio:0000058
related_mappings:
- snomed:115668003
- snomed:115668003
is_a: Resource
slots:
- recombinantMaterial
- biologicalSourceType
- biologicalPartOrigin
slot_usage:
recombinantMaterial:
name: recombinantMaterial
description: Indicates if this biological material is a recombinant biological
material.
title: recombinant material
ifabsent: 'false'
domain_of:
- BiologicalMaterialOrigin
range: boolean
required: true
multivalued: false
biologicalSourceType:
name: biologicalSourceType
description: Indicates whether the biological material includes any part originally
collected from a natural source (true) or is composed exclusively of synthetic
parts (false).
title: biological source type
comments:
- It makes sense that only recombinant biological materials can have a mixed material
origin! Mixed origin (natural + synthetic) is represented by EVORAO:recombinantMaterial
= true and EVORAO:biologicalSourceType = true, together with both EVORAO:NaturalPartOrigin
and EVORAO:SyntheticPartOrigin instances linked via EVORAO:biologicalPartOrigin
domain_of:
- BiologicalMaterialOrigin
range: boolean
required: true
multivalued: false
biologicalPartOrigin:
name: biologicalPartOrigin
description: Details the origin of one or more unitary parts that make up the
biological material. In the case of recombinant biological material, multiple
parts may be involved.
title: biological part origin
comments:
- It can be multiple parts in case of a recombinant biological material.
related_mappings:
- schema:hasBioChemEntityPart
domain_of:
- BiologicalMaterialOrigin
range: BiologicalPartOrigin
required: true
multivalued: true
```
Induced
```yaml
name: BiologicalMaterialOrigin
description: Information about the origin of the biological material, compulsory for
access, utilization, and benefit-sharing of genetic resources in compliance with
the Nagoya Protocol.
title: Biological material origin
from_schema: https://w3id.org/evorao/
close_mappings:
- sepio:0000058
- sepio:0000058
related_mappings:
- snomed:115668003
- snomed:115668003
is_a: Resource
slot_usage:
recombinantMaterial:
name: recombinantMaterial
description: Indicates if this biological material is a recombinant biological
material.
title: recombinant material
ifabsent: 'false'
domain_of:
- BiologicalMaterialOrigin
range: boolean
required: true
multivalued: false
biologicalSourceType:
name: biologicalSourceType
description: Indicates whether the biological material includes any part originally
collected from a natural source (true) or is composed exclusively of synthetic
parts (false).
title: biological source type
comments:
- It makes sense that only recombinant biological materials can have a mixed material
origin! Mixed origin (natural + synthetic) is represented by EVORAO:recombinantMaterial
= true and EVORAO:biologicalSourceType = true, together with both EVORAO:NaturalPartOrigin
and EVORAO:SyntheticPartOrigin instances linked via EVORAO:biologicalPartOrigin
domain_of:
- BiologicalMaterialOrigin
range: boolean
required: true
multivalued: false
biologicalPartOrigin:
name: biologicalPartOrigin
description: Details the origin of one or more unitary parts that make up the
biological material. In the case of recombinant biological material, multiple
parts may be involved.
title: biological part origin
comments:
- It can be multiple parts in case of a recombinant biological material.
related_mappings:
- schema:hasBioChemEntityPart
domain_of:
- BiologicalMaterialOrigin
range: BiologicalPartOrigin
required: true
multivalued: true
attributes:
recombinantMaterial:
name: recombinantMaterial
description: Indicates if this biological material is a recombinant biological
material.
title: recombinant material
from_schema: https://w3id.org/evorao/
rank: 1000
ifabsent: 'false'
alias: recombinantMaterial
owner: BiologicalMaterialOrigin
domain_of:
- BiologicalMaterialOrigin
range: boolean
required: true
multivalued: false
biologicalSourceType:
name: biologicalSourceType
description: Indicates whether the biological material includes any part originally
collected from a natural source (true) or is composed exclusively of synthetic
parts (false).
title: biological source type
comments:
- It makes sense that only recombinant biological materials can have a mixed material
origin! Mixed origin (natural + synthetic) is represented by EVORAO:recombinantMaterial
= true and EVORAO:biologicalSourceType = true, together with both EVORAO:NaturalPartOrigin
and EVORAO:SyntheticPartOrigin instances linked via EVORAO:biologicalPartOrigin
from_schema: https://w3id.org/evorao/
rank: 1000
alias: biologicalSourceType
owner: BiologicalMaterialOrigin
domain_of:
- BiologicalMaterialOrigin
range: boolean
required: true
multivalued: false
biologicalPartOrigin:
name: biologicalPartOrigin
description: Details the origin of one or more unitary parts that make up the
biological material. In the case of recombinant biological material, multiple
parts may be involved.
title: biological part origin
comments:
- It can be multiple parts in case of a recombinant biological material.
from_schema: https://w3id.org/evorao/
related_mappings:
- schema:hasBioChemEntityPart
rank: 1000
alias: biologicalPartOrigin
owner: BiologicalMaterialOrigin
domain_of:
- BiologicalMaterialOrigin
range: BiologicalPartOrigin
required: true
multivalued: true
keyword:
name: keyword
description: A keyword or tag describing the resource.
title: keyword
from_schema: https://w3id.org/evorao/
rank: 1000
slot_uri: dcat:keyword
alias: keyword
owner: BiologicalMaterialOrigin
domain_of:
- Resource
range: string
required: false
multivalued: true
dateIssued:
name: dateIssued
description: Date of formal issuance (e.g., publication) of the resource.
title: date issued
comments:
- encoded using the relevant ISO 8601 Date and Time compliant string [DATETIME].
from_schema: https://w3id.org/evorao/
exact_mappings:
- sepio:0000051
close_mappings:
- schema:datePublished
- schema:dateCreated
rank: 1000
slot_uri: dct:issued
alias: dateIssued
owner: BiologicalMaterialOrigin
domain_of:
- Resource
range: datetime
required: false
multivalued: false
dateModified:
name: dateModified
description: Most recent date on which the resource was changed, updated or modified.
title: date modified
comments:
- encoded using the relevant ISO 8601 Date and Time compliant string [DATETIME].
from_schema: https://w3id.org/evorao/
exact_mappings:
- sepio:0000036
close_mappings:
- schema:dateModified
rank: 1000
slot_uri: dct:modified
alias: dateModified
owner: BiologicalMaterialOrigin
domain_of:
- Resource
range: datetime
required: false
multivalued: false
identifier:
name: identifier
description: A unique identifier of the resource being described or cataloged.
title: identifier
comments:
- The identifier is a text string which is assigned to the resource to provide
an unambiguous reference within a particular context. Persistent identifiers
should be provided as HTTP URIs.
from_schema: https://w3id.org/evorao/
exact_mappings:
- schema:identifier
rank: 1000
slot_uri: dct:identifier
alias: identifier
owner: BiologicalMaterialOrigin
domain_of:
- Resource
range: string
required: false
multivalued: true
iri:
name: iri
description: International Resource Identifier (IRI) that uniquely identifies
or refers to the resource. IRIs include URIs, and URIs include URLs.
title: IRI
comments:
- An IRI is a global identifier standardized by IETF RFC 3987. It may or may not
be resolvable on the web. IRIs include URIs, and URIs include URLs.
from_schema: https://w3id.org/evorao/
close_mappings:
- biolink:iri
related_mappings:
- mi:url
narrow_mappings:
- schema:url
rank: 1000
is_a: identifier
alias: iri
owner: BiologicalMaterialOrigin
domain_of:
- Resource
range: uri
required: false
multivalued: true
publisher:
name: publisher
description: The entity responsible for making the resource available.
title: publisher
comments:
- Resources of type foaf:Agent like EVORAO:PersonOrOrganization are recommended
as values for this property.
from_schema: https://w3id.org/evorao/
rank: 1000
slot_uri: dct:publisher
alias: publisher
owner: BiologicalMaterialOrigin
domain_of:
- Resource
range: PersonOrOrganization
required: false
multivalued: false
```