Class: Variant (Variant)
An organism with one or more new mutations is referred to as a “variant” of the original organism if not sufficiently different to be termed a distinct strain.
URI: EVORAO:Variant
classDiagram
class Variant
click Variant href "../Variant"
CommonName <|-- Variant
click CommonName href "../CommonName"
Variant : alternateName
Variant --> "*" AlternateName : alternateName
click AlternateName href "../AlternateName"
Variant : dateIssued
Variant : dateModified
Variant : description
Variant : identifier
Variant : inVocabulary
Variant --> "0..1 _recommended_" Vocabulary : inVocabulary
click Vocabulary href "../Vocabulary"
Variant : iri
Variant : keyword
Variant : publisher
Variant --> "0..1" PersonOrOrganization : publisher
click PersonOrOrganization href "../PersonOrOrganization"
Variant : sourceOfInformation
Variant : title
Variant : weight
Inheritance
Slots
Usages
Schema Source
- from schema: https://w3id.org/evorao/
Mappings
| Mapping Type |
Mapped Value |
| self |
EVORAO:Variant |
| native |
EVORAO:Variant |
| close |
wd:Q104795308, wd:Q104795308 |
LinkML Source
Direct
```yaml
name: Variant
description: An organism with one or more new mutations is referred to as a “variant”
of the original organism if not sufficiently different to be termed a distinct strain.
title: Variant
from_schema: https://w3id.org/evorao/
close_mappings:
- wd:Q104795308
- wd:Q104795308
is_a: CommonName
```
Induced
```yaml
name: Variant
description: An organism with one or more new mutations is referred to as a “variant”
of the original organism if not sufficiently different to be termed a distinct strain.
title: Variant
from_schema: https://w3id.org/evorao/
close_mappings:
- wd:Q104795308
- wd:Q104795308
is_a: CommonName
attributes:
alternateName:
name: alternateName
description: Any other name under which the entity can be known.
title: alternate name
comments:
- This includes previous names, acronyms, former taxonomic terms, and other variations.
- This information can serve as keywords for search purposes and as a bridge with
other projects that use different naming systems or taxonomies.
from_schema: https://w3id.org/evorao/
exact_mappings:
- schema:alternateName
- dct:alternative
- iao:0000118
close_mappings:
- wdp:P4970
rank: 1000
alias: alternateName
owner: Variant
domain_of:
- CommonName
- AlternateName
- Taxon
- ClinicalGroup
- Organization
range: AlternateName
required: false
multivalued: true
sourceOfInformation:
name: sourceOfInformation
description: The name of the origin from which knowledge is obtained. This can
include any entity that provides information.
title: source of information
from_schema: https://w3id.org/evorao/
close_mappings:
- wdp:P248
related_mappings:
- sio:000253
rank: 1000
alias: sourceOfInformation
owner: Variant
domain_of:
- CommonName
- AlternateName
range: string
required: false
multivalued: true
title:
name: title
description: A name given to the resource.
title: title
comments:
- The title of the item should be as short and descriptive as possible.
- 'E.g. for virus products it should basically be based on the following Pattern:
''Virus name'', ''virus host type'', ''collection year'', ''country of collection''
ex ''suspected epidemiological origin'', ''genotype'', ''strain'', ''variant
name or specific feature.'
from_schema: https://w3id.org/evorao/
exact_mappings:
- schema:name
- rdfs:label
rank: 1000
slot_uri: dct:title
alias: title
owner: Variant
domain_of:
- Term
- Dataset
- DataService
- Publication
- License
- Certification
- FundingSource
range: string
required: true
multivalued: false
description:
name: description
description: A short explanation of the characteristics, features, or nature of
the current item.
title: description
comments:
- Describe this item in few lines. This description will serve as a summary to
present the resource.
from_schema: https://w3id.org/evorao/
exact_mappings:
- schema:description
rank: 1000
slot_uri: dct:description
alias: description
owner: Variant
domain_of:
- Term
- Dataset
- DataService
- PersonOrOrganization
- File
- ContactPoint
- License
- Certification
- FundingSource
range: string
required: false
recommended: true
multivalued: false
weight:
name: weight
description: A numerical value indicating relative importance or priority, generally
processed in ascending order. This weight helps prioritize content when organizing
or processing data. Its value can be negative, with a default set to 0.
title: weight
comments:
- The lowest weighted Data providers are triggered first.
- This property may be usefull to populate at first entities that are referenced
by others (e.g. Version ahead of Rank ahead of Taxon).
from_schema: https://w3id.org/evorao/
close_mappings:
- adms:status
rank: 1000
ifabsent: int(0)
alias: weight
owner: Variant
domain_of:
- Term
- DataProvider
range: integer
required: false
recommended: true
multivalued: false
inVocabulary:
name: inVocabulary
description: Terms belong to a specific vocabulary.
title: in Vocabulary
from_schema: https://w3id.org/evorao/
close_mappings:
- wdp:P972
related_mappings:
- dct:isReferencedBy
broad_mappings:
- dct:isPartOf
rank: 1000
alias: inVocabulary
owner: Variant
domain_of:
- Term
range: Vocabulary
required: false
recommended: true
multivalued: false
keyword:
name: keyword
description: A keyword or tag describing the resource.
title: keyword
from_schema: https://w3id.org/evorao/
rank: 1000
slot_uri: dcat:keyword
alias: keyword
owner: Variant
domain_of:
- Resource
range: string
required: false
multivalued: true
dateIssued:
name: dateIssued
description: Date of formal issuance (e.g., publication) of the resource.
title: date issued
comments:
- encoded using the relevant ISO 8601 Date and Time compliant string [DATETIME].
from_schema: https://w3id.org/evorao/
exact_mappings:
- sepio:0000051
close_mappings:
- schema:datePublished
- schema:dateCreated
rank: 1000
slot_uri: dct:issued
alias: dateIssued
owner: Variant
domain_of:
- Resource
range: datetime
required: false
multivalued: false
dateModified:
name: dateModified
description: Most recent date on which the resource was changed, updated or modified.
title: date modified
comments:
- encoded using the relevant ISO 8601 Date and Time compliant string [DATETIME].
from_schema: https://w3id.org/evorao/
exact_mappings:
- sepio:0000036
close_mappings:
- schema:dateModified
rank: 1000
slot_uri: dct:modified
alias: dateModified
owner: Variant
domain_of:
- Resource
range: datetime
required: false
multivalued: false
identifier:
name: identifier
description: A unique identifier of the resource being described or cataloged.
title: identifier
comments:
- The identifier is a text string which is assigned to the resource to provide
an unambiguous reference within a particular context. Persistent identifiers
should be provided as HTTP URIs.
from_schema: https://w3id.org/evorao/
exact_mappings:
- schema:identifier
rank: 1000
slot_uri: dct:identifier
alias: identifier
owner: Variant
domain_of:
- Resource
range: string
required: false
multivalued: true
iri:
name: iri
description: International Resource Identifier (IRI) that uniquely identifies
or refers to the resource. IRIs include URIs, and URIs include URLs.
title: IRI
comments:
- An IRI is a global identifier standardized by IETF RFC 3987. It may or may not
be resolvable on the web. IRIs include URIs, and URIs include URLs.
from_schema: https://w3id.org/evorao/
close_mappings:
- biolink:iri
related_mappings:
- mi:url
narrow_mappings:
- schema:url
rank: 1000
is_a: identifier
alias: iri
owner: Variant
domain_of:
- Resource
range: uri
required: false
multivalued: true
publisher:
name: publisher
description: The entity responsible for making the resource available.
title: publisher
comments:
- Resources of type foaf:Agent like EVORAO:PersonOrOrganization are recommended
as values for this property.
from_schema: https://w3id.org/evorao/
rank: 1000
slot_uri: dct:publisher
alias: publisher
owner: Variant
domain_of:
- Resource
range: PersonOrOrganization
required: false
multivalued: false
```