EVORAO

Class: Taxonomy (Taxonomy)

A structured representation of data about the classification and naming of biological organisms into groups according to shared characteristics.

URI: EVORAO:Taxonomy

 classDiagram
    class Taxonomy
    click Taxonomy href "../Taxonomy"
      Catalogue <|-- Taxonomy
        click Catalogue href "../Catalogue"
      
      Taxonomy : dateIssued
        
      Taxonomy : dateModified
        
      Taxonomy : description
        
      Taxonomy : identifier
        
      Taxonomy : iri
        
      Taxonomy : keyword
        
      Taxonomy : publisher
        
          
    
    
    Taxonomy --> "0..1" PersonOrOrganization : publisher
    click PersonOrOrganization href "../PersonOrOrganization"

        
      Taxonomy : rank
        
          
    
    
    Taxonomy --> "* _recommended_" TaxonomicRank : rank
    click TaxonomicRank href "../TaxonomicRank"

        
      Taxonomy : rankDataProvider
        
          
    
    
    Taxonomy --> "0..1" DataProvider : rankDataProvider
    click DataProvider href "../DataProvider"

        
      Taxonomy : taxon
        
          
    
    
    Taxonomy --> "*" Taxon : taxon
    click Taxon href "../Taxon"

        
      Taxonomy : taxonDataProvider
        
          
    
    
    Taxonomy --> "0..1" DataProvider : taxonDataProvider
    click DataProvider href "../DataProvider"

        
      Taxonomy : title
        
      Taxonomy : version
        
      Taxonomy : versionDataProvider
        
          
    
    
    Taxonomy --> "1" DataProvider : versionDataProvider
    click DataProvider href "../DataProvider"

Inheritance

Resource
- Dataset
  - Catalogue
    - Taxonomy

Slots

Name	Cardinality and Range	Description	Inheritance
taxon	* Taxon	Scientifically classified group or entity within the reference taxonomy	direct
taxonDataProvider	0..1 DataProvider	The data provider for the taxons of the taxonomy	direct
version	1 recommended String	The version indicator (name or identifier) of a resource	direct
versionDataProvider	1 DataProvider	The data provider for the Version ID of this taxonomy	direct
rank	* recommended TaxonomicRank	Relative level or position of the identified taxon in the taxonomy	direct
rankDataProvider	0..1 DataProvider	The data provider for the description of the taxonomic ranks used in this tax…	direct
title	1 String	A name given to the resource	Dataset
description	1 recommended String	A short explanation of the characteristics, features, or nature of the curren…	Dataset
keyword	* String	A keyword or tag describing the resource	Resource
dateIssued	0..1 Datetime	Date of formal issuance (e	Resource
dateModified	0..1 Datetime	Most recent date on which the resource was changed, updated or modified	Resource
identifier	* String	A unique identifier of the resource being described or cataloged	Resource
iri	* Uri	International Resource Identifier (IRI) that uniquely identifies or refers to…	Resource
publisher	0..1 PersonOrOrganization	The entity responsible for making the resource available	Resource

Usages

used by	used in	type	used
TaxonomicRank	taxonomy	range	Taxonomy
Taxon	taxonomy	range	Taxonomy

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/evorao/

Mappings

Mapping Type	Mapped Value
self	EVORAO:Taxonomy
native	EVORAO:Taxonomy
broad	skos:Collection, skos:Collection
related	wd:Q8269924, wd:Q8269924
close	edam:3028, ncit:C17469, edam:3028, ncit:C17469

LinkML Source

Direct

Induced

```yaml name: Taxonomy description: A structured representation of data about the classification and naming of biological organisms into groups according to shared characteristics. title: Taxonomy from_schema: https://w3id.org/evorao/ close_mappings: - edam:3028 - ncit:C17469 - edam:3028 - ncit:C17469 related_mappings: - wd:Q8269924 - wd:Q8269924 broad_mappings: - skos:Collection - skos:Collection is_a: Catalogue slot_usage: taxon: name: taxon description: Scientifically classified group or entity within the reference taxonomy. title: taxon close_mappings: - schema:taxonomicRange - dwc:taxonID - dwc:toTaxon related_mappings: - dwc:Taxon domain_of: - Taxonomy - PathogenIdentification - ClinicalGroup range: Taxon required: false multivalued: true taxonDataProvider: name: taxonDataProvider description: The data provider for the taxons of the taxonomy. title: taxon data provider domain_of: - Taxonomy range: DataProvider required: false multivalued: false version: name: version description: The version indicator (name or identifier) of a resource. title: version exact_mappings: - pav:version close_mappings: - wdp:P393 - schema:version related_mappings: - schema:identifier slot_uri: dcat:version domain_of: - Taxonomy - Dataset - Version range: string required: true multivalued: false versionDataProvider: name: versionDataProvider description: The data provider for the Version ID of this taxonomy. title: version data provider domain_of: - Taxonomy range: DataProvider required: true multivalued: false rank: name: rank description: Relative level or position of the identified taxon in the taxonomy. title: rank exact_mappings: - wdp:P105 close_mappings: - dwc:taxonRank - schema:taxonRank - biolink:has_taxonomic_rank related_mappings: - taxrank:1000000 - ncbitaxon:has_rank domain_of: - Taxonomy - Taxon range: TaxonomicRank required: false multivalued: true rankDataProvider: name: rankDataProvider description: The data provider for the description of the taxonomic ranks used in this taxonomy. title: rank data provider domain_of: - Taxonomy range: DataProvider required: false multivalued: false attributes: taxon: name: taxon description: Scientifically classified group or entity within the reference taxonomy. title: taxon comments: - The taxon of the highest rank known that can be used to classify a pathogen or group of pathogens (e.g viruses) in the reference taxonomy. from_schema: https://w3id.org/evorao/ close_mappings: - schema:taxonomicRange - dwc:taxonID - dwc:toTaxon related_mappings: - dwc:Taxon rank: 1000 alias: taxon owner: Taxonomy domain_of: - Taxonomy - PathogenIdentification - ClinicalGroup range: Taxon required: false multivalued: true taxonDataProvider: name: taxonDataProvider description: The data provider for the taxons of the taxonomy. title: taxon data provider from_schema: https://w3id.org/evorao/ rank: 1000 alias: taxonDataProvider owner: Taxonomy domain_of: - Taxonomy range: DataProvider required: false multivalued: false version: name: version description: The version indicator (name or identifier) of a resource. title: version from_schema: https://w3id.org/evorao/ exact_mappings: - pav:version close_mappings: - wdp:P393 - schema:version related_mappings: - schema:identifier rank: 1000 slot_uri: dcat:version alias: version owner: Taxonomy domain_of: - Taxonomy - Dataset - Version range: string required: true recommended: true multivalued: false versionDataProvider: name: versionDataProvider description: The data provider for the Version ID of this taxonomy. title: version data provider from_schema: https://w3id.org/evorao/ rank: 1000 alias: versionDataProvider owner: Taxonomy domain_of: - Taxonomy range: DataProvider required: true multivalued: false rank: name: rank description: Relative level or position of the identified taxon in the taxonomy. title: rank from_schema: https://w3id.org/evorao/ exact_mappings: - wdp:P105 close_mappings: - dwc:taxonRank - schema:taxonRank - biolink:has_taxonomic_rank related_mappings: - taxrank:1000000 - ncbitaxon:has_rank rank: 1000 alias: rank owner: Taxonomy domain_of: - Taxonomy - Taxon range: TaxonomicRank required: false recommended: true multivalued: true rankDataProvider: name: rankDataProvider description: The data provider for the description of the taxonomic ranks used in this taxonomy. title: rank data provider from_schema: https://w3id.org/evorao/ rank: 1000 alias: rankDataProvider owner: Taxonomy domain_of: - Taxonomy range: DataProvider required: false multivalued: false title: name: title description: A name given to the resource. title: title comments: - The title of the item should be as short and descriptive as possible. - 'E.g. for virus products it should basically be based on the following Pattern: ''Virus name'', ''virus host type'', ''collection year'', ''country of collection'' ex ''suspected epidemiological origin'', ''genotype'', ''strain'', ''variant name or specific feature.' from_schema: https://w3id.org/evorao/ exact_mappings: - schema:name - rdfs:label rank: 1000 slot_uri: dct:title alias: title owner: Taxonomy domain_of: - Dataset - DataService - Publication - Term - License - Certification - FundingSource range: string required: true multivalued: false description: name: description description: A short explanation of the characteristics, features, or nature of the current item. title: description comments: - Describe this item in few lines. This description will serve as a summary to present the resource. from_schema: https://w3id.org/evorao/ exact_mappings: - schema:description rank: 1000 slot_uri: dct:description alias: description owner: Taxonomy domain_of: - Dataset - DataService - Term - PersonOrOrganization - File - ContactPoint - License - Certification - FundingSource range: string required: true recommended: true multivalued: false keyword: name: keyword description: A keyword or tag describing the resource. title: keyword from_schema: https://w3id.org/evorao/ rank: 1000 slot_uri: dcat:keyword alias: keyword owner: Taxonomy domain_of: - Resource range: string required: false multivalued: true dateIssued: name: dateIssued description: Date of formal issuance (e.g., publication) of the resource. title: date issued comments: - encoded using the relevant ISO 8601 Date and Time compliant string [DATETIME]. from_schema: https://w3id.org/evorao/ exact_mappings: - sepio:0000051 close_mappings: - schema:datePublished - schema:dateCreated rank: 1000 slot_uri: dct:issued alias: dateIssued owner: Taxonomy domain_of: - Resource range: datetime required: false multivalued: false dateModified: name: dateModified description: Most recent date on which the resource was changed, updated or modified. title: date modified comments: - encoded using the relevant ISO 8601 Date and Time compliant string [DATETIME]. from_schema: https://w3id.org/evorao/ exact_mappings: - sepio:0000036 close_mappings: - schema:dateModified rank: 1000 slot_uri: dct:modified alias: dateModified owner: Taxonomy domain_of: - Resource range: datetime required: false multivalued: false identifier: name: identifier description: A unique identifier of the resource being described or cataloged. title: identifier comments: - The identifier is a text string which is assigned to the resource to provide an unambiguous reference within a particular context. Persistent identifiers should be provided as HTTP URIs. from_schema: https://w3id.org/evorao/ exact_mappings: - schema:identifier rank: 1000 slot_uri: dct:identifier alias: identifier owner: Taxonomy domain_of: - Resource range: string required: false multivalued: true iri: name: iri description: International Resource Identifier (IRI) that uniquely identifies or refers to the resource. IRIs include URIs, and URIs include URLs. title: IRI comments: - An IRI is a global identifier standardized by IETF RFC 3987. It may or may not be resolvable on the web. IRIs include URIs, and URIs include URLs. from_schema: https://w3id.org/evorao/ close_mappings: - biolink:iri related_mappings: - mi:url narrow_mappings: - schema:url rank: 1000 is_a: identifier alias: iri owner: Taxonomy domain_of: - Resource range: uri required: false multivalued: true publisher: name: publisher description: The entity responsible for making the resource available. title: publisher comments: - Resources of type foaf:Agent like EVORAO:PersonOrOrganization are recommended as values for this property. from_schema: https://w3id.org/evorao/ rank: 1000 slot_uri: dct:publisher alias: publisher owner: Taxonomy domain_of: - Resource range: PersonOrOrganization required: false multivalued: false ```

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