Class: Synthetic part origin (SyntheticPartOrigin)
Information on the origin of a synthetic part that composes the biological material.
URI: EVORAO:SyntheticPartOrigin
classDiagram
class SyntheticPartOrigin
click SyntheticPartOrigin href "../SyntheticPartOrigin"
BiologicalPartOrigin <|-- SyntheticPartOrigin
click BiologicalPartOrigin href "../BiologicalPartOrigin"
SyntheticPartOrigin : accessToPhysicalGeneticResource
SyntheticPartOrigin : dateIssued
SyntheticPartOrigin : dateModified
SyntheticPartOrigin : descriptionOfModificationsMadeFromTheReferenceSequences
SyntheticPartOrigin : identifier
SyntheticPartOrigin : iri
SyntheticPartOrigin : keyword
SyntheticPartOrigin : modificationsFromTheReferenceSequences
SyntheticPartOrigin : publisher
SyntheticPartOrigin --> "0..1" PersonOrOrganization : publisher
click PersonOrOrganization href "../PersonOrOrganization"
SyntheticPartOrigin : recombinantPartIdentification
SyntheticPartOrigin --> "0..1" RecombinantPartIdentification : recombinantPartIdentification
click RecombinantPartIdentification href "../RecombinantPartIdentification"
Inheritance
Slots
Schema Source
- from schema: https://w3id.org/evorao/
Mappings
| Mapping Type |
Mapped Value |
| self |
EVORAO:SyntheticPartOrigin |
| native |
EVORAO:SyntheticPartOrigin |
LinkML Source
Direct
```yaml
name: SyntheticPartOrigin
description: Information on the origin of a synthetic part that composes the biological
material.
title: Synthetic part origin
from_schema: https://w3id.org/evorao/
is_a: BiologicalPartOrigin
slots:
- modificationsFromTheReferenceSequences
- descriptionOfModificationsMadeFromTheReferenceSequences
slot_usage:
modificationsFromTheReferenceSequences:
name: modificationsFromTheReferenceSequences
description: Set to TRUE if there was is any modification made from the reference
sequence.
title: modifications from the reference sequence(s)
related_mappings:
- geno:0000967
domain_of:
- SyntheticPartOrigin
range: boolean
required: true
multivalued: false
descriptionOfModificationsMadeFromTheReferenceSequences:
name: descriptionOfModificationsMadeFromTheReferenceSequences
description: List the modifications mades from the reference sequence if any.
title: description of modification(s) made from the reference sequence(s)
related_mappings:
- uniprotrdfs:modification
domain_of:
- SyntheticPartOrigin
range: string
required: false
recommended: true
multivalued: false
```
Induced
```yaml
name: SyntheticPartOrigin
description: Information on the origin of a synthetic part that composes the biological
material.
title: Synthetic part origin
from_schema: https://w3id.org/evorao/
is_a: BiologicalPartOrigin
slot_usage:
modificationsFromTheReferenceSequences:
name: modificationsFromTheReferenceSequences
description: Set to TRUE if there was is any modification made from the reference
sequence.
title: modifications from the reference sequence(s)
related_mappings:
- geno:0000967
domain_of:
- SyntheticPartOrigin
range: boolean
required: true
multivalued: false
descriptionOfModificationsMadeFromTheReferenceSequences:
name: descriptionOfModificationsMadeFromTheReferenceSequences
description: List the modifications mades from the reference sequence if any.
title: description of modification(s) made from the reference sequence(s)
related_mappings:
- uniprotrdfs:modification
domain_of:
- SyntheticPartOrigin
range: string
required: false
recommended: true
multivalued: false
attributes:
modificationsFromTheReferenceSequences:
name: modificationsFromTheReferenceSequences
description: Set to TRUE if there was is any modification made from the reference
sequence.
title: modifications from the reference sequence(s)
from_schema: https://w3id.org/evorao/
related_mappings:
- geno:0000967
rank: 1000
alias: modificationsFromTheReferenceSequences
owner: SyntheticPartOrigin
domain_of:
- SyntheticPartOrigin
range: boolean
required: true
multivalued: false
descriptionOfModificationsMadeFromTheReferenceSequences:
name: descriptionOfModificationsMadeFromTheReferenceSequences
description: List the modifications mades from the reference sequence if any.
title: description of modification(s) made from the reference sequence(s)
from_schema: https://w3id.org/evorao/
related_mappings:
- uniprotrdfs:modification
rank: 1000
alias: descriptionOfModificationsMadeFromTheReferenceSequences
owner: SyntheticPartOrigin
domain_of:
- SyntheticPartOrigin
range: string
required: false
recommended: true
multivalued: false
recombinantPartIdentification:
name: recombinantPartIdentification
description: Identification of a recombinant part.
title: recombinant part identification
comments:
- Information not required if the current biological part constitutes the complete
biological material.
from_schema: https://w3id.org/evorao/
rank: 1000
alias: recombinantPartIdentification
owner: SyntheticPartOrigin
domain_of:
- BiologicalPartOrigin
range: RecombinantPartIdentification
required: false
multivalued: false
accessToPhysicalGeneticResource:
name: accessToPhysicalGeneticResource
description: Indicate if the biological part was produced with access to a physical
genetic resource.
title: access to physical genetic resource
from_schema: https://w3id.org/evorao/
rank: 1000
alias: accessToPhysicalGeneticResource
owner: SyntheticPartOrigin
domain_of:
- BiologicalPartOrigin
range: boolean
required: false
recommended: true
multivalued: false
keyword:
name: keyword
description: A keyword or tag describing the resource.
title: keyword
from_schema: https://w3id.org/evorao/
rank: 1000
slot_uri: dcat:keyword
alias: keyword
owner: SyntheticPartOrigin
domain_of:
- Resource
range: string
required: false
multivalued: true
dateIssued:
name: dateIssued
description: Date of formal issuance (e.g., publication) of the resource.
title: date issued
comments:
- encoded using the relevant ISO 8601 Date and Time compliant string [DATETIME].
from_schema: https://w3id.org/evorao/
exact_mappings:
- sepio:0000051
close_mappings:
- schema:datePublished
- schema:dateCreated
rank: 1000
slot_uri: dct:issued
alias: dateIssued
owner: SyntheticPartOrigin
domain_of:
- Resource
range: datetime
required: false
multivalued: false
dateModified:
name: dateModified
description: Most recent date on which the resource was changed, updated or modified.
title: date modified
comments:
- encoded using the relevant ISO 8601 Date and Time compliant string [DATETIME].
from_schema: https://w3id.org/evorao/
exact_mappings:
- sepio:0000036
close_mappings:
- schema:dateModified
rank: 1000
slot_uri: dct:modified
alias: dateModified
owner: SyntheticPartOrigin
domain_of:
- Resource
range: datetime
required: false
multivalued: false
identifier:
name: identifier
description: A unique identifier of the resource being described or cataloged.
title: identifier
comments:
- The identifier is a text string which is assigned to the resource to provide
an unambiguous reference within a particular context. Persistent identifiers
should be provided as HTTP URIs.
from_schema: https://w3id.org/evorao/
exact_mappings:
- schema:identifier
rank: 1000
slot_uri: dct:identifier
alias: identifier
owner: SyntheticPartOrigin
domain_of:
- Resource
range: string
required: false
multivalued: true
iri:
name: iri
description: International Resource Identifier (IRI) that uniquely identifies
or refers to the resource. IRIs include URIs, and URIs include URLs.
title: IRI
comments:
- An IRI is a global identifier standardized by IETF RFC 3987. It may or may not
be resolvable on the web. IRIs include URIs, and URIs include URLs.
from_schema: https://w3id.org/evorao/
close_mappings:
- biolink:iri
related_mappings:
- mi:url
narrow_mappings:
- schema:url
rank: 1000
is_a: identifier
alias: iri
owner: SyntheticPartOrigin
domain_of:
- Resource
range: uri
required: false
multivalued: true
publisher:
name: publisher
description: The entity responsible for making the resource available.
title: publisher
comments:
- Resources of type foaf:Agent like EVORAO:PersonOrOrganization are recommended
as values for this property.
from_schema: https://w3id.org/evorao/
rank: 1000
slot_uri: dct:publisher
alias: publisher
owner: SyntheticPartOrigin
domain_of:
- Resource
range: PersonOrOrganization
required: false
multivalued: false
```