Class: Clinical group (ClinicalGroup)
A syndromic grouping of pathogens, based on typical disease manifestation, clinical syndrome, or primary system affected. Examples include Respiratory viruses, Hemorrhagic viruses, and Gastroenteritis viruses. Clinical groups are not taxonomic categories but practical classifications used in medicine, epidemiology, and public health.
URI: EVORAO:ClinicalGroup
classDiagram
class ClinicalGroup
click ClinicalGroup href "../ClinicalGroup"
Term <|-- ClinicalGroup
click Term href "../Term"
ClinicalGroup : alternateName
ClinicalGroup --> "*" AlternateName : alternateName
click AlternateName href "../AlternateName"
ClinicalGroup : dateIssued
ClinicalGroup : dateModified
ClinicalGroup : description
ClinicalGroup : identifier
ClinicalGroup : inVocabulary
ClinicalGroup --> "0..1 _recommended_" Vocabulary : inVocabulary
click Vocabulary href "../Vocabulary"
ClinicalGroup : iri
ClinicalGroup : keyword
ClinicalGroup : publisher
ClinicalGroup --> "0..1" PersonOrOrganization : publisher
click PersonOrOrganization href "../PersonOrOrganization"
ClinicalGroup : taxon
ClinicalGroup --> "*" Taxon : taxon
click Taxon href "../Taxon"
ClinicalGroup : title
ClinicalGroup : weight
Inheritance
Slots
Schema Source
- from schema: https://w3id.org/evorao/
Mappings
| Mapping Type |
Mapped Value |
| self |
EVORAO:ClinicalGroup |
| native |
EVORAO:ClinicalGroup |
LinkML Source
Direct
```yaml
name: ClinicalGroup
description: A syndromic grouping of pathogens, based on typical disease manifestation,
clinical syndrome, or primary system affected. Examples include Respiratory viruses,
Hemorrhagic viruses, and Gastroenteritis viruses. Clinical groups are not taxonomic
categories but practical classifications used in medicine, epidemiology, and public
health.
title: Clinical group
from_schema: https://w3id.org/evorao/
is_a: Term
slots:
- alternateName
- taxon
slot_usage:
alternateName:
name: alternateName
description: Any other name under which the entity can be known.
title: alternate name
comments:
- This includes previous names, acronyms, former taxonomic terms, and other variations.
- This information can serve as keywords for search purposes and as a bridge with
other projects that use different naming systems or taxonomies.
exact_mappings:
- schema:alternateName
- dct:alternative
- iao:0000118
close_mappings:
- wdp:P4970
domain_of:
- ClinicalGroup
- CommonName
- AlternateName
- Taxon
- Organization
range: AlternateName
required: false
multivalued: true
taxon:
name: taxon
description: Scientifically classified group or entity within the reference taxonomy.
title: taxon
close_mappings:
- schema:taxonomicRange
- dwc:taxonID
- dwc:toTaxon
related_mappings:
- dwc:Taxon
domain_of:
- ClinicalGroup
- Taxonomy
- PathogenIdentification
range: Taxon
required: false
multivalued: true
```
Induced
```yaml
name: ClinicalGroup
description: A syndromic grouping of pathogens, based on typical disease manifestation,
clinical syndrome, or primary system affected. Examples include Respiratory viruses,
Hemorrhagic viruses, and Gastroenteritis viruses. Clinical groups are not taxonomic
categories but practical classifications used in medicine, epidemiology, and public
health.
title: Clinical group
from_schema: https://w3id.org/evorao/
is_a: Term
slot_usage:
alternateName:
name: alternateName
description: Any other name under which the entity can be known.
title: alternate name
comments:
- This includes previous names, acronyms, former taxonomic terms, and other variations.
- This information can serve as keywords for search purposes and as a bridge with
other projects that use different naming systems or taxonomies.
exact_mappings:
- schema:alternateName
- dct:alternative
- iao:0000118
close_mappings:
- wdp:P4970
domain_of:
- ClinicalGroup
- CommonName
- AlternateName
- Taxon
- Organization
range: AlternateName
required: false
multivalued: true
taxon:
name: taxon
description: Scientifically classified group or entity within the reference taxonomy.
title: taxon
close_mappings:
- schema:taxonomicRange
- dwc:taxonID
- dwc:toTaxon
related_mappings:
- dwc:Taxon
domain_of:
- ClinicalGroup
- Taxonomy
- PathogenIdentification
range: Taxon
required: false
multivalued: true
attributes:
alternateName:
name: alternateName
description: Any other name under which the entity can be known.
title: alternate name
comments:
- This includes previous names, acronyms, former taxonomic terms, and other variations.
- This information can serve as keywords for search purposes and as a bridge with
other projects that use different naming systems or taxonomies.
from_schema: https://w3id.org/evorao/
exact_mappings:
- schema:alternateName
- dct:alternative
- iao:0000118
close_mappings:
- wdp:P4970
rank: 1000
alias: alternateName
owner: ClinicalGroup
domain_of:
- ClinicalGroup
- CommonName
- AlternateName
- Taxon
- Organization
range: AlternateName
required: false
multivalued: true
taxon:
name: taxon
description: Scientifically classified group or entity within the reference taxonomy.
title: taxon
comments:
- The taxon of the highest rank known that can be used to classify a pathogen
or group of pathogens (e.g viruses) in the reference taxonomy.
from_schema: https://w3id.org/evorao/
close_mappings:
- schema:taxonomicRange
- dwc:taxonID
- dwc:toTaxon
related_mappings:
- dwc:Taxon
rank: 1000
alias: taxon
owner: ClinicalGroup
domain_of:
- ClinicalGroup
- Taxonomy
- PathogenIdentification
range: Taxon
required: false
multivalued: true
title:
name: title
description: A name given to the resource.
title: title
comments:
- The title of the item should be as short and descriptive as possible.
- 'E.g. for virus products it should basically be based on the following Pattern:
''Virus name'', ''virus host type'', ''collection year'', ''country of collection''
ex ''suspected epidemiological origin'', ''genotype'', ''strain'', ''variant
name or specific feature.'
from_schema: https://w3id.org/evorao/
exact_mappings:
- schema:name
- rdfs:label
rank: 1000
slot_uri: dct:title
alias: title
owner: ClinicalGroup
domain_of:
- Term
- Dataset
- DataService
- Publication
- License
- Certification
- FundingSource
range: string
required: true
multivalued: false
description:
name: description
description: A short explanation of the characteristics, features, or nature of
the current item.
title: description
comments:
- Describe this item in few lines. This description will serve as a summary to
present the resource.
from_schema: https://w3id.org/evorao/
exact_mappings:
- schema:description
rank: 1000
slot_uri: dct:description
alias: description
owner: ClinicalGroup
domain_of:
- Term
- Dataset
- DataService
- PersonOrOrganization
- File
- ContactPoint
- License
- Certification
- FundingSource
range: string
required: false
recommended: true
multivalued: false
weight:
name: weight
description: A numerical value indicating relative importance or priority, generally
processed in ascending order. This weight helps prioritize content when organizing
or processing data. Its value can be negative, with a default set to 0.
title: weight
comments:
- The lowest weighted Data providers are triggered first.
- This property may be usefull to populate at first entities that are referenced
by others (e.g. Version ahead of Rank ahead of Taxon).
from_schema: https://w3id.org/evorao/
close_mappings:
- adms:status
rank: 1000
ifabsent: int(0)
alias: weight
owner: ClinicalGroup
domain_of:
- Term
- DataProvider
range: integer
required: false
recommended: true
multivalued: false
inVocabulary:
name: inVocabulary
description: Terms belong to a specific vocabulary.
title: in Vocabulary
from_schema: https://w3id.org/evorao/
close_mappings:
- wdp:P972
related_mappings:
- dct:isReferencedBy
broad_mappings:
- dct:isPartOf
rank: 1000
alias: inVocabulary
owner: ClinicalGroup
domain_of:
- Term
range: Vocabulary
required: false
recommended: true
multivalued: false
keyword:
name: keyword
description: A keyword or tag describing the resource.
title: keyword
from_schema: https://w3id.org/evorao/
rank: 1000
slot_uri: dcat:keyword
alias: keyword
owner: ClinicalGroup
domain_of:
- Resource
range: string
required: false
multivalued: true
dateIssued:
name: dateIssued
description: Date of formal issuance (e.g., publication) of the resource.
title: date issued
comments:
- encoded using the relevant ISO 8601 Date and Time compliant string [DATETIME].
from_schema: https://w3id.org/evorao/
exact_mappings:
- sepio:0000051
close_mappings:
- schema:datePublished
- schema:dateCreated
rank: 1000
slot_uri: dct:issued
alias: dateIssued
owner: ClinicalGroup
domain_of:
- Resource
range: datetime
required: false
multivalued: false
dateModified:
name: dateModified
description: Most recent date on which the resource was changed, updated or modified.
title: date modified
comments:
- encoded using the relevant ISO 8601 Date and Time compliant string [DATETIME].
from_schema: https://w3id.org/evorao/
exact_mappings:
- sepio:0000036
close_mappings:
- schema:dateModified
rank: 1000
slot_uri: dct:modified
alias: dateModified
owner: ClinicalGroup
domain_of:
- Resource
range: datetime
required: false
multivalued: false
identifier:
name: identifier
description: A unique identifier of the resource being described or cataloged.
title: identifier
comments:
- The identifier is a text string which is assigned to the resource to provide
an unambiguous reference within a particular context. Persistent identifiers
should be provided as HTTP URIs.
from_schema: https://w3id.org/evorao/
exact_mappings:
- schema:identifier
rank: 1000
slot_uri: dct:identifier
alias: identifier
owner: ClinicalGroup
domain_of:
- Resource
range: string
required: false
multivalued: true
iri:
name: iri
description: International Resource Identifier (IRI) that uniquely identifies
or refers to the resource. IRIs include URIs, and URIs include URLs.
title: IRI
comments:
- An IRI is a global identifier standardized by IETF RFC 3987. It may or may not
be resolvable on the web. IRIs include URIs, and URIs include URLs.
from_schema: https://w3id.org/evorao/
close_mappings:
- biolink:iri
related_mappings:
- mi:url
narrow_mappings:
- schema:url
rank: 1000
is_a: identifier
alias: iri
owner: ClinicalGroup
domain_of:
- Resource
range: uri
required: false
multivalued: true
publisher:
name: publisher
description: The entity responsible for making the resource available.
title: publisher
comments:
- Resources of type foaf:Agent like EVORAO:PersonOrOrganization are recommended
as values for this property.
from_schema: https://w3id.org/evorao/
rank: 1000
slot_uri: dct:publisher
alias: publisher
owner: ClinicalGroup
domain_of:
- Resource
range: PersonOrOrganization
required: false
multivalued: false
```